Re: Bug#876839: staden-io-lib FTBFS on big endian: error: invalid operands to binary & (original) (raw)

control: tag -1 help

Hi,

it seems this problem happens in bgzip interface. Is there any known change to the compression library that is incompatible since staden-iu-lib was successfully uploaded and built (at least on several architectures) yesterday.

Any help is welcome

 Andreas.

On Tue, Sep 26, 2017 at 12:27:27PM +0300, Adrian Bunk wrote:

Source: staden-io-lib Version: 1.14.9-2 Severity: serious

https://buildd.debian.org/status/package.php?p=staden-io-lib&suite=sid

... In file included from bgzip.c:56:0: bgzip.c: In function 'gzi_index_dump': ../io_lib/os.h:127:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long int') (((x & 0x00000000000000ffLL) << 56) +
^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:190:16: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&n), sizeof(n), 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:128:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long int') ((x & 0x000000000000ff00LL) << 40) +
^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:190:16: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&n), sizeof(n), 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:129:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long int') ((x & 0x0000000000ff0000LL) << 24) +
^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:190:16: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&n), sizeof(n), 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:130:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long int') ((x & 0x00000000ff000000LL) << 8) +
^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:190:16: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&n), sizeof(n), 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:131:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long int') ((x & 0x000000ff00000000LL) >> 8) +
^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:190:16: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&n), sizeof(n), 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:132:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long int') ((x & 0x0000ff0000000000LL) >> 24) +
^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:190:16: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&n), sizeof(n), 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:133:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long int') ((x & 0x00ff000000000000LL) >> 40) +
^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:190:16: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&n), sizeof(n), 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:134:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long unsigned int') ((x & 0xff00000000000000LL) >> 56)) ^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:190:16: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&n), sizeof(n), 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:127:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long int') (((x & 0x00000000000000ffLL) << 56) +
^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:193:13: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&idx->c_off[i]), sizeof idx->c_off[i], 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:128:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long int') ((x & 0x000000000000ff00LL) << 40) +
^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:193:13: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&idx->c_off[i]), sizeof idx->c_off[i], 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:129:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long int') ((x & 0x0000000000ff0000LL) << 24) +
^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:193:13: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&idx->c_off[i]), sizeof idx->c_off[i], 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:130:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long int') ((x & 0x00000000ff000000LL) << 8) +
^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:193:13: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&idx->c_off[i]), sizeof idx->c_off[i], 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:131:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long int') ((x & 0x000000ff00000000LL) >> 8) +
^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:193:13: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&idx->c_off[i]), sizeof idx->c_off[i], 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:132:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long int') ((x & 0x0000ff0000000000LL) >> 24) +
^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:193:13: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&idx->c_off[i]), sizeof idx->c_off[i], 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:133:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long int') ((x & 0x00ff000000000000LL) >> 40) +
^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:193:13: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&idx->c_off[i]), sizeof idx->c_off[i], 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:134:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long unsigned int') ((x & 0xff00000000000000LL) >> 56)) ^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:193:13: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&idx->c_off[i]), sizeof idx->c_off[i], 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:127:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long int') (((x & 0x00000000000000ffLL) << 56) +
^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:195:13: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&idx->u_off[i]), sizeof idx->u_off[i], 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:128:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long int') ((x & 0x000000000000ff00LL) << 40) +
^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:195:13: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&idx->u_off[i]), sizeof idx->u_off[i], 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:129:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long int') ((x & 0x0000000000ff0000LL) << 24) +
^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:195:13: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&idx->u_off[i]), sizeof idx->u_off[i], 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:130:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long int') ((x & 0x00000000ff000000LL) << 8) +
^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:195:13: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&idx->u_off[i]), sizeof idx->u_off[i], 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:131:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long int') ((x & 0x000000ff00000000LL) >> 8) +
^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:195:13: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&idx->u_off[i]), sizeof idx->u_off[i], 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:132:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long int') ((x & 0x0000ff0000000000LL) >> 24) +
^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:195:13: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&idx->u_off[i]), sizeof idx->u_off[i], 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:133:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long int') ((x & 0x00ff000000000000LL) >> 40) +
^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:195:13: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&idx->u_off[i]), sizeof idx->u_off[i], 1, idx_f) != 1) ^~~~~~~ ../io_lib/os.h:134:10: error: invalid operands to binary & (have 'uint64_t * {aka long long unsigned int *}' and 'long long unsigned int') ((x & 0xff00000000000000LL) >> 56)) ^ ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8' #define le_int8(x) iswap_int8((x)) ^~~~~~~~~~ bgzip.c:195:13: note: in expansion of macro 'le_int8' if (fwrite(le_int8(&idx->u_off[i]), sizeof idx->u_off[i], 1, idx_f) != 1) ^~~~~~~ Makefile:1019: recipe for target 'libstaden_read_la-bgzip.lo' failed make[3]: *** [libstaden_read_la-bgzip.lo] Error 1

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