Examples using MPI_GATHER, MPI_GATHERV (original) (raw)
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The examples in this section use intracommunicators.
ExampleGather 100 ints from every process in group to root. See Figure 4 .
MPI_Comm comm;
int gsize,sendarray[100];
int root, *rbuf;
...
MPI_Comm_size(comm, &gsize);
rbuf = (int *)malloc(gsize*100*sizeof(int));
MPI_Gather(sendarray, 100, MPI_INT, rbuf, 100, MPI_INT, root, comm); ExamplePrevious example modified --- only the root allocates memory for the receive buffer.
MPI_Comm comm;
int gsize,sendarray[100];
int root, myrank, *rbuf;
...
MPI_Comm_rank(comm, &myrank);
if (myrank == root) {
MPI_Comm_size(comm, &gsize);
rbuf = (int *)malloc(gsize*100*sizeof(int));
}
MPI_Gather(sendarray, 100, MPI_INT, rbuf, 100, MPI_INT, root, comm); 
Figure 4: The root process gathers 100 ints from each process in the group.
ExampleDo the same as the previous example, but use a derived datatype. Note that the type cannot be the entire set of gsize*100 ints since type matching is defined pairwise between the root and each process in the gather.
MPI_Comm comm;
int gsize,sendarray[100];
int root, *rbuf;
MPI_Datatype rtype;
...
MPI_Comm_size(comm, &gsize);
MPI_Type_contiguous(100, MPI_INT, &rtype);
MPI_Type_commit(&rtype);
rbuf = (int *)malloc(gsize*100*sizeof(int));
MPI_Gather(sendarray, 100, MPI_INT, rbuf, 1, rtype, root, comm); ExampleNow have each process send 100 ints to root, but place each set (of 100) stride ints apart at receiving end. Use MPI_GATHERVand the displsargument to achieve this effect. Assume 
. See Figure 5 .
MPI_Comm comm;
int gsize,sendarray[100];
int root, *rbuf, stride;
int *displs,i,*rcounts;
...
MPI_Comm_size(comm, &gsize);
rbuf = (int *)malloc(gsize*stride*sizeof(int));
displs = (int *)malloc(gsize*sizeof(int));
rcounts = (int *)malloc(gsize*sizeof(int));
for (i=0; i<gsize; ++i) {
displs[i] = i*stride;
rcounts[i] = 100;
}
MPI_Gatherv(sendarray, 100, MPI_INT, rbuf, rcounts, displs, MPI_INT,
root, comm); Note that the program is erroneous if stride < 100.
Figure 5: The root process gathers 100 ints from each process in the group, each set is placed stride ints apart.
ExampleSame as Example Examples using MPI_GATHER, MPI_GATHERV on the receiving side, but send the 100 ints from the 0th column of a 100_×_150 int array, in C. See Figure 6 .
MPI_Comm comm;
int gsize,sendarray[100][150];
int root, *rbuf, stride;
MPI_Datatype stype;
int *displs,i,*rcounts;
...
MPI_Comm_size(comm, &gsize);
rbuf = (int *)malloc(gsize*stride*sizeof(int));
displs = (int *)malloc(gsize*sizeof(int));
rcounts = (int *)malloc(gsize*sizeof(int));
for (i=0; i<gsize; ++i) {
displs[i] = i*stride;
rcounts[i] = 100;
}
/* Create datatype for 1 column of array
*/
MPI_Type_vector(100, 1, 150, MPI_INT, &stype);
MPI_Type_commit(&stype);
MPI_Gatherv(sendarray, 1, stype, rbuf, rcounts, displs, MPI_INT,
root, comm); 
Figure 6: The root process gathers column 0 of a 100$ x $150 C array, and each set is placed stride ints apart.
ExampleProcess i sends (100-i) ints from the i-th column of a 100 × 150 int array, in C. It is received into a buffer with stride, as in the previous two examples. See Figure 7 .
MPI_Comm comm;
int gsize,sendarray[100][150],*sptr;
int root, *rbuf, stride, myrank;
MPI_Datatype stype;
int *displs,i,*rcounts;
...
MPI_Comm_size(comm, &gsize);
MPI_Comm_rank(comm, &myrank);
rbuf = (int *)malloc(gsize*stride*sizeof(int));
displs = (int *)malloc(gsize*sizeof(int));
rcounts = (int *)malloc(gsize*sizeof(int));
for (i=0; i<gsize; ++i) {
displs[i] = i*stride;
rcounts[i] = 100-i; /* note change from previous example */
}
/* Create datatype for the column we are sending
*/
MPI_Type_vector(100-myrank, 1, 150, MPI_INT, &stype);
MPI_Type_commit(&stype);
/* sptr is the address of start of "myrank" column
*/
sptr = &sendarray[0][myrank];
MPI_Gatherv(sptr, 1, stype, rbuf, rcounts, displs, MPI_INT,
root, comm); Note that a different amount of data is received from each process.
Figure 7: The root process gathers 100-i ints from column i of a 100$ x $150 C array, and each set is placed stride ints apart.
ExampleSame as Example Examples using MPI_GATHER, MPI_GATHERV , but done in a different way at the sending end. We create a datatype that causes the correct striding at the sending end so that we read a column of a C array. A similar thing was done in Example Examples , Section Examples .
MPI_Comm comm;
int gsize, sendarray[100][150], *sptr;
int root, *rbuf, stride, myrank;
MPI_Datatype stype;
int *displs, i, *rcounts;
...
MPI_Comm_size(comm, &gsize);
MPI_Comm_rank(comm, &myrank);
rbuf = (int *)malloc(gsize*stride*sizeof(int));
displs = (int *)malloc(gsize*sizeof(int));
rcounts = (int *)malloc(gsize*sizeof(int));
for (i=0; i<gsize; ++i) {
displs[i] = i*stride;
rcounts[i] = 100-i;
}
/* Create datatype for one int, with extent of entire row
*/
MPI_Type_create_resized( MPI_INT, 0, 150*sizeof(int), &stype);
MPI_Type_commit(&stype);
sptr = &sendarray[0][myrank];
MPI_Gatherv(sptr, 100-myrank, stype, rbuf, rcounts, displs, MPI_INT,
root, comm); ExampleSame as Example Examples using MPI_GATHER, MPI_GATHERV at sending side, but at receiving side we make the stride between received blocks vary from block to block. See Figure 8 .
MPI_Comm comm;
int gsize,sendarray[100][150],*sptr;
int root, *rbuf, *stride, myrank, bufsize;
MPI_Datatype stype;
int *displs,i,*rcounts,offset;
...
MPI_Comm_size(comm, &gsize);
MPI_Comm_rank(comm, &myrank);
stride = (int *)malloc(gsize*sizeof(int));
...
/* stride[i] for i = 0 to gsize-1 is set somehow
*/
/* set up displs and rcounts vectors first
*/
displs = (int *)malloc(gsize*sizeof(int));
rcounts = (int *)malloc(gsize*sizeof(int));
offset = 0;
for (i=0; i<gsize; ++i) {
displs[i] = offset;
offset += stride[i];
rcounts[i] = 100-i;
}
/* the required buffer size for rbuf is now easily obtained
*/
bufsize = displs[gsize-1]+rcounts[gsize-1];
rbuf = (int *)malloc(bufsize*sizeof(int));
/* Create datatype for the column we are sending
*/
MPI_Type_vector(100-myrank, 1, 150, MPI_INT, &stype);
MPI_Type_commit(&stype);
sptr = &sendarray[0][myrank];
MPI_Gatherv(sptr, 1, stype, rbuf, rcounts, displs, MPI_INT,
root, comm); 
Figure 8: The root process gathers 100-i ints from column i of a 100$ x $150 C array, and each set is placed stride[i] ints apart (a varying stride).
ExampleProcess i sends num ints from the i-th column of a 100 × 150 int array, in C. The complicating factor is that the various values of num are not known to root, so a separate gather must first be run to find these out. The data is placed contiguously at the receiving end.
MPI_Comm comm;
int gsize,sendarray[100][150],*sptr;
int root, *rbuf, myrank;
MPI_Datatype stype;
int *displs,i,*rcounts,num;
...
MPI_Comm_size(comm, &gsize);
MPI_Comm_rank(comm, &myrank);
/* First, gather nums to root
*/
rcounts = (int *)malloc(gsize*sizeof(int));
MPI_Gather(&num, 1, MPI_INT, rcounts, 1, MPI_INT, root, comm);
/* root now has correct rcounts, using these we set displs[] so
* that data is placed contiguously (or concatenated) at receive end
*/
displs = (int *)malloc(gsize*sizeof(int));
displs[0] = 0;
for (i=1; i<gsize; ++i) {
displs[i] = displs[i-1]+rcounts[i-1];
}
/* And, create receive buffer
*/
rbuf = (int *)malloc(gsize*(displs[gsize-1]+rcounts[gsize-1])
*sizeof(int));
/* Create datatype for one int, with extent of entire row
*/
MPI_Type_create_resized( MPI_INT, 0, 150*sizeof(int), &stype);
MPI_Type_commit(&stype);
sptr = &sendarray[0][myrank];
MPI_Gatherv(sptr, num, stype, rbuf, rcounts, displs, MPI_INT,
root, comm);
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