SNAPC1 (original) (raw)

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Protein-coding gene in the species Homo sapiens

SNAPC1
Identifiers
Aliases	SNAPC1, PTFgamma, SNAP43, small nuclear RNA activating complex polypeptide 1
External IDs	OMIM: 600591; MGI: 1922877; HomoloGene: 2317; GeneCards: SNAPC1; OMA:SNAPC1 - orthologs
Gene location (Human)Chr.Chromosome 14 (human)[1]Band14q23.2Start61,762,420 bp[1]End61,796,428 bp[1]
Gene location (Mouse)Chr.Chromosome 12 (mouse)[2]Band12|12 C3Start74,011,255 bp[2]End74,035,740 bp[2]
RNA expression patternBgeeHuman Mouse (ortholog)Top expressed intesticlecartilage tissueoocytesecondary oocytespermbronchial epithelial cellAchilles tendontail of epididymiscaput epididymismucosa of paranasal sinusTop expressed inotolith organutriclesupraoptic nucleuszygotesecondary oocytepituitary glandhandneural layer of retinaparaventricular nucleus of hypothalamuscumulus cellMore reference expression dataBioGPSMore reference expression data
Gene ontologyMolecular function DNA binding sequence-specific DNA binding Cellular component snRNA-activating protein complex nucleus nucleoplasm nucleolus Biological process regulation of transcription, DNA-templated transcription, DNA-templated snRNA transcription by RNA polymerase III snRNA transcription by RNA polymerase II Sources:Amigo / QuickGO
OrthologsSpeciesHuman MouseEntrez661775627EnsemblENSG00000023608ENSMUSG00000021113UniProtQ16533Q8K0S9RefSeq (mRNA)NM_003082NM_178392RefSeq (protein)NP_003073NP_848479Location (UCSC)Chr 14: 61.76 – 61.8 MbChr 12: 74.01 – 74.04 MbPubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

snRNA-activating protein complex subunit 1 is a protein that in humans is encoded by the SNAPC1 gene.[5][6]

SNAPC1 has been shown to interact with SNAPC4,[7] SNAPC3[7][8] and Retinoblastoma protein.[9]

1. ^ a b c GRCh38: Ensembl release 89: ENSG00000023608 – Ensembl, May 2017
2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000021113 – Ensembl, May 2017
3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. ^ Maeng JH, Yoon JB (September 1998). "The human PTFgamma/SNAP43 gene: structure, chromosomal location, and identification of a VNTR in 5'-UTR". J Biochem. 124 (1): 23–7. doi:10.1093/oxfordjournals.jbchem.a022085. PMID 9644240.
6. ^ "Entrez Gene: SNAPC1 small nuclear RNA activating complex, polypeptide 1, 43kDa".
7. ^ a b Ma B, Hernandez N (February 2001). "A map of protein-protein contacts within the small nuclear RNA-activating protein complex SNAPc". J. Biol. Chem. 276 (7). United States: 5027–35. doi:10.1074/jbc.M009301200. ISSN 0021-9258. PMID 11056176.
8. ^ Henry RW, Ma B, Sadowski C L, Kobayashi R, Hernandez N (Dec 1996). "Cloning and characterization of SNAP50, a subunit of the snRNA-activating protein complex SNAPc". EMBO J. 15 (24). ENGLAND: 7129–36. doi:10.1002/j.1460-2075.1996.tb01104.x. ISSN 0261-4189. PMC 452539. PMID 9003788.
9. ^ Hirsch HA, Gu L, Henry R W (Dec 2000). "The Retinoblastoma Tumor Suppressor Protein Targets Distinct General Transcription Factors To Regulate RNA Polymerase III Gene Expression". Mol. Cell. Biol. 20 (24). UNITED STATES: 9182–91. doi:10.1128/MCB.20.24.9182-9191.2000. ISSN 0270-7306. PMC 102176. PMID 11094070.

• Henry RW, Sadowski CL, Kobayashi R, Hernandez N (1995). "A TBP-TAF complex required for transcription of human snRNA genes by RNA polymerase II and III". Nature. 374 (6523): 653–6. Bibcode:1995Natur.374..653H. doi:10.1038/374653a0. PMID 7715707. S2CID 4325527.
• Yoon JB, Roeder RG (1996). "Cloning of two proximal sequence element-binding transcription factor subunits (gamma and delta) that are required for transcription of small nuclear RNA genes by RNA polymerases II and III and interact with the TATA-binding protein". Mol. Cell. Biol. Advances in Molecular and Cell Biology. 16 (1): 1–9. doi:10.1016/S1569-2558(08)60061-2. ISBN 978-0-7623-0143-0. PMC 230972. PMID 8524284.
• Henry RW, Ma B, Sadowski CL, et al. (1997). "Cloning and characterization of SNAP50, a subunit of the snRNA-activating protein complex SNAPc". EMBO J. 15 (24): 7129–36. doi:10.1002/j.1460-2075.1996.tb01104.x. PMC 452539. PMID 9003788.
• Ma B, Hernandez N (2001). "A map of protein-protein contacts within the small nuclear RNA-activating protein complex SNAPc". J. Biol. Chem. 276 (7): 5027–35. doi:10.1074/jbc.M009301200. PMID 11056176.
• Hirsch HA, Gu L, Henry RW (2001). "The Retinoblastoma Tumor Suppressor Protein Targets Distinct General Transcription Factors To Regulate RNA Polymerase III Gene Expression". Mol. Cell. Biol. 20 (24): 9182–91. doi:10.1128/MCB.20.24.9182-9191.2000. PMC 102176. PMID 11094070.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
• Hinkley CS, Hirsch HA, Gu L, et al. (2003). "The small nuclear RNA-activating protein 190 Myb DNA binding domain stimulates TATA box-binding protein-TATA box recognition". J. Biol. Chem. 278 (20): 18649–57. doi:10.1074/jbc.M204247200. PMID 12621023.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
• Gu L, Esselman WJ, Henry RW (2005). "Cooperation between small nuclear RNA-activating protein complex (SNAPC) and TATA-box-binding protein antagonizes protein kinase CK2 inhibition of DNA binding by SNAPC". J. Biol. Chem. 280 (30): 27697–704. doi:10.1074/jbc.M503206200. PMID 15955816.
• Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID 16189514. S2CID 4427026.