Communication in bacteria: an ecological and evolutionary perspective (original) (raw)

• Greenberg, E. P. Bacterial communication: tiny teamwork. Nature 424, 134 (2003).
  CAS PubMed Google Scholar
• Henke, J. M. & Bassler, B. L. Bacterial social engagements. Trends Cell Biol. 14, 648?656 (2004).
  CAS PubMed Google Scholar
• Kolenbrander, P. E., Egland, P. G., Diaz, P. I. & Palmer, R. J. Jr. Genome?genome interactions: bacterial communities in initial dental plaque. Trends Microbiol. 13, 11?15 (2005).
  CAS PubMed Google Scholar
• Lyon, G. J. & Novick, R. P. Peptide signaling in Staphylococcus aureus and other Gram-positive bacteria. Peptides 25, 1389?1403 (2004).
  CAS PubMed Google Scholar
• Parsek, M. R. & Greenberg, E. P. Sociomicrobiology: the connections between quorum sensing and biofilms. Trends Microbiol. 13, 27?33 (2005).
  CAS PubMed Google Scholar
• Crespi, B. J. The evolution of social behavior in microorganisms. Trends Ecol. Evol. 16, 178?183 (2001).
  PubMed Google Scholar
• Bourke, A. F. G. & Franks, N. R. Social Evolution in Ants (Princeton University Press, Princeton, 1995).
  Google Scholar
• Hamilton, W. D. The genetical evolution of social behaviour. I. J. Theor. Biol. 7, 1?16 (1964).
  CAS PubMed Google Scholar
• Hamilton, W. D. The genetical evolution of social behaviour. II. J. Theor. Biol. 7, 17?52 (1964).
  CAS PubMed Google Scholar
• Keller, L. Levels of Selection in Evolution (Princeton University Press, Princeton 1999). A book that reviews examples of conflicts that occur at the different levels of biological organization (for example, between genes within organisms and between organisms within social groups).
  Google Scholar
• Szathmary, E. & Maynard Smith, J. The Major Transitions in Evolution (Freeman Press, Oxford 1995).
  Google Scholar
• Keller, L. & Reeve, H. K. Kin selection. In Encyclopedia of Evolution 595?600 (Oxford University Press, Oxford, 2002).
  Google Scholar
• Queller, D. C. Does population viscosity promote kin selection? Trends Ecol. Evol. 7, 322?324 (1992).
  CAS PubMed Google Scholar
• Redfield, R. J. Is quorum sensing a side effect of diffusion sensing? Trends Microbiol. 10, 365?370 (2002). A thought-provoking commentary that challenges the conventional view of quorum sensing.
  CAS PubMed Google Scholar
• Shompole, S. et al. Biphasic intracellular expression of Staphylococcus aureus virulence factors and evidence for Agr-mediated diffusion sensing. Mol. Microbiol. 49, 919?927 (2003).
  CAS PubMed Google Scholar
• McFall-Ngai, M. J. Negotiations between animals and bacteria: the 'diplomacy' of the squid?Vibrio symbiosis. Comp. Biochem. Physiol. A Mol. Integr. Physiol. 126, 471?480 (2000).
  CAS PubMed Google Scholar
• Ruby, E. G. The Euprymna scolopes?Vibrio fischeri symbiosis: a biomedical model for the study of bacterial colonization of animal tissue. J. Mol. Microbiol. Biotechnol. 1, 13?21 (1999).
  CAS PubMed Google Scholar
• Visick, K. L. Layers of signaling in a bacterium?host association. J. Bacteriol. 187, 3603?3606 (2005).
  CAS PubMed PubMed Central Google Scholar
• Hastings, J. W. & Greenberg, E. P. Quorum sensing: the explanation of a curious phenomenon reveals a common characteristic of bacteria. J. Bacteriol. 181, 2667?2668 (1999).
  CAS PubMed PubMed Central Google Scholar
• Sachs, J. L., Mueller, U. G., Wilcox, T. P. & Bull, J. J. The evolution of cooperation. Q. Rev. Biol. 79, 135?160 (2004). A review of the mechanisms and selective forces that can maintain cooperation within and between species.
  PubMed Google Scholar
• Manefield, M. & Turner, S. L. Quorum sensing in context: out of molecular biology and into microbial ecology. Microbiology 148, 3762?3764 (2002).
  CAS PubMed Google Scholar
• Kleerebezem, M., Quadri, L. E., Kuipers, O. P. & de Vos, W. M. Quorum sensing by peptide pheromones and two-component signal-transduction systems in Gram-positive bacteria. Mol. Microbiol. 24, 895?904 (1997).
  CAS PubMed Google Scholar
• Mayville, P. et al. Structure?activity analysis of synthetic autoinducing thiolactone peptides from Staphylococcus aureus responsible for virulence. Proc. Natl Acad. Sci. USA 96, 1218?1223 (1999).
  CAS PubMed PubMed Central Google Scholar
• Ji, G., Beavis, R. & Novick, R. P. Bacterial interference caused by autoinducing peptide variants. Science 276, 2027?2030 (1997).
  CAS PubMed Google Scholar
• Lyon, G. J., Wright, J. S., Muir, T. W. & Novick, R. P. Key determinants of receptor activation in the agr autoinducing peptides of Staphylococcus aureus. Biochemistry 41, 10095?10104 (2002).
  CAS PubMed Google Scholar
• Eberl, L. _N_-acyl homoserinelactone-mediated gene regulation in Gram-negative bacteria. Syst. Appl. Microbiol. 22, 493?506 (1999).
  CAS PubMed Google Scholar
• Fuqua, C., Parsek, M. R. & Greenberg, E. P. Regulation of gene expression by cell-to-cell communication: acyl-homoserine lactone quorum sensing. Annu. Rev. Genet. 35, 439?468 (2001).
  CAS PubMed Google Scholar
• Pearson, J. P. et al. Structure of the autoinducer required for expression of Pseudomonas aeruginosa virulence genes. Proc. Natl Acad. Sci. USA 91, 197?201 (1994).
  CAS PubMed PubMed Central Google Scholar
• Winson, M. K. et al. Multiple _N_-acyl-L-homoserine lactone signal molecules regulate production of virulence determinants and secondary metabolites in Pseudomonas aeruginosa. Proc. Natl Acad. Sci. USA 92, 9427?9431 (1995).
  CAS PubMed PubMed Central Google Scholar
• Shaw, P. D. et al. Detecting and characterizing _N_-acyl-homoserine lactone signal molecules by thin-layer chromatography. Proc. Natl Acad. Sci. USA 94, 6036?6041 (1997).
  CAS PubMed PubMed Central Google Scholar
• Surette, M. G., Miller, M. B. & Bassler, B. L. Quorum sensing in Escherichia coli, Salmonella typhimurium, and Vibrio harveyi: a new family of genes responsible for autoinducer production. Proc. Natl Acad. Sci. USA 96, 1639?1644 (1999).
  CAS PubMed PubMed Central Google Scholar
• Xavier, K. B. & Bassler, B. L. LuxS quorum sensing: more than just a numbers game. Curr. Opin. Microbiol. 6, 191?197 (2003).
  CAS PubMed Google Scholar
• Vendeville, A., Winzer, K., Heurlier, K., Tang, C. M. & Hardie, K. R. Making 'sense' of metabolism: autoinducer-2, LuxS and pathogenic bacteria. Nature Rev. Microbiol. 3, 383?396 (2005).
  CAS Google Scholar
• Sun, J., Daniel, R., Wagner-Dobler, I. & Zeng, A. P. Is autoinducer-2 a universal signal for interspecies communication: a comparative genomic and phylogenetic analysis of the synthesis and signal transduction pathways. BMC Evol. Biol. 4, 36 (2004).
  PubMed PubMed Central Google Scholar
• Schauder, S., Shokat, K., Surette, M. G. & Bassler, B. L. The LuxS family of bacterial autoinducers: biosynthesis of a novel quorum-sensing signal molecule. Mol. Microbiol. 41, 463?476 (2001).
  CAS PubMed Google Scholar
• Burgess, N. A. et al. LuxS-dependent quorum sensing in Porphyromonas gingivalis modulates protease and haemagglutinin activities but is not essential for virulence. Microbiology 148, 763?772 (2002).
  CAS PubMed Google Scholar
• Chen, X. et al. Structural identification of a bacterial quorum-sensing signal containing boron. Nature 415, 545?549 (2002). This paper reports the structure of AI-2 as it is bound in the Vibrio harveyi receptor LuxP complexed with boron (see also reference 41).
  CAS PubMed Google Scholar
• Miller, S. T. et al. Salmonella typhimurium recognizes a chemically distinct form of the bacterial quorum-sensing signal AI-2. Mol. Cell 15, 677?687 (2004).
  CAS PubMed Google Scholar
• Winzer, K., Hardie, K. R. & Williams, P. LuxS and autoinducer-2: their contribution to quorum sensing and metabolism in bacteria. Adv. Appl. Microbiol. 53, 291?396 (2003).
  CAS PubMed Google Scholar
• Travisano, M. & Velicer, G. J. Strategies of microbial cheater control. Trends Microbiol. 12, 72?78 (2004).
  CAS PubMed Google Scholar
• Velicer, G. J. Social strife in the microbial world. Trends Microbiol. 11, 330?337 (2003). This review provides examples of selfish strategies that undermine cooperative behaviour across various microbial systems.
  CAS PubMed Google Scholar
• Maynard Smith, J. & Harper, D. Animal Signals (Oxford University Press, Oxford, 2003). A book that discusses, from a theoretical perspective, the problem of communication in animals.
  Google Scholar
• Duan, K., Dammel, C., Stein, J., Rabin, H. & Surette, M. G. Modulation of Pseudomonas aeruginosa gene expression by host microflora through interspecies communication. Mol. Microbiol. 50, 1477?1491 (2003). Demonstrates the interaction of oropharyngeal flora with P. aeruginosa , which results in enhanced pathogenicity. This is an example of the pathogen using AI-2 that is produced by other bacteria as a cue.
  CAS PubMed Google Scholar
• Varaldi, J. et al. Infectious behavior in a parasitoid. Science 302, 1930 (2003).
• Thomas, F., Adamo, S. & Moore, J. Parasitic manipulation: where are we and where should we go? Behav. Processes 68, 185?199 (2005).
  PubMed Google Scholar
• Werren, J. H. Biology of Wolbachia. Annu. Rev. Entomol. 42, 587?609 (1997).
  CAS PubMed Google Scholar
• Kolenbrander, P. E. et al. Communication among oral bacteria. Microbiol. Mol. Biol. Rev. 66, 486?505 (2002).
  CAS PubMed PubMed Central Google Scholar
• Marsh, P. D. Dental plaque as a microbial biofilm. Caries Res. 38, 204?211 (2004).
  CAS PubMed Google Scholar
• Egland, P. G., Palmer, R. J. Jr & Kolenbrander, P. E. Interspecies communication in Streptococcus gordonii?Veillonella atypica biofilms: signaling in flow conditions requires juxtaposition. Proc. Natl Acad. Sci. USA 101, 16917?16922 (2004). Demonstrates an example of chemical manipulation between two oral bacteria, in which one strain produces a signal that alters the metabolism of the other. It also demonstrates that signalling occurs only on a very local scale.
  CAS PubMed PubMed Central Google Scholar
• Griffin, A. S., West, S. A. & Buckling, A. Cooperation and competition in pathogenic bacteria. Nature 430, 1024?1027 (2004). Shows that experimental manipulation of relatedness affects the level cooperative siderophore production in P. aeruginosa .
  CAS PubMed Google Scholar
• Fiegna, F. & Velicer, G. J. Exploitative and hierarchical antagonism in a cooperative bacteria. PLoS Biol. 3, 1980?1087 (2005).
  CAS Google Scholar
• Escalante, R. & Vicente, J. J. Dictyostelium discoideum: a model system for differentiation and patterning. Int. J. Dev. Biol. 44, 819?835 (2000).
  CAS PubMed Google Scholar
• Weijer, C. J. Dictyostelium morphogenesis. Curr. Opin. Genet. Dev. 14, 392?398 (2004).
  CAS PubMed Google Scholar
• Kaiser, D. Signaling in myxobacteria. Annu. Rev. Microbiol. 58, 75?98 (2004).
  CAS PubMed Google Scholar
• Kaplan, H. B. Multicellular development and gliding motility in Myxococcus xanthus. Curr. Opin. Microbiol. 6, 572?577 (2003).
  CAS PubMed Google Scholar
• Sogaard-Andersen, L. Cell polarity, intercellular signalling and morphogenetic cell movements in Myxococcus xanthus. Curr. Opin. Microbiol. 7, 587?593 (2004).
  CAS PubMed Google Scholar
• Shimkets, L. J. Intercellular signaling during fruiting-body development of Myxococcus xanthus. Annu. Rev. Microbiol. 53, 525?549 (1999).
  CAS PubMed Google Scholar
• Jelsbak, L. & Sogaard-Andersen, L. The cell surface-associated intercellular C-signal induces behavioral changes in individual Myxococcus xanthus cells during fruiting body morphogenesis. Proc. Natl Acad. Sci. USA 96, 5031?5036 (1999).
  CAS PubMed PubMed Central Google Scholar
• Kruse, T., Lobedanz, S., Berthelsen, N. M. & Sogaard-Andersen, L. C-signal: a cell surface-associated morphogen that induces and co-ordinates multicellular fruiting body morphogenesis and sporulation in Myxococcus xanthus. Mol. Microbiol. 40, 156?168 (2001).
  CAS PubMed Google Scholar
• Strassmann, J. E. Bacterial cheaters. Nature 404, 555?556 (2000).
  CAS PubMed Google Scholar
• Velicer, G. J., Kroos, L. & Lenski, R. E. Developmental cheating in the social bacterium Myxococcus xanthus. Nature 404, 598?601 (2000). Demonstrates that some mutants that are defective for fruiting-body development are over-represented among the spores that are produced. This shows a trade-off between cooperative traits that is beneficial to the group but costly to the individual.
  CAS PubMed Google Scholar
• Chandler, J. R. & Dunny, G. M. Enterococcal peptide sex pheromones: synthesis and control of biological activity. Peptides 25, 1377?1388 (2004).
  CAS PubMed Google Scholar
• Dunny, G. M., Antiporta, M. H. & Hirt, H. Peptide pheromone-induced transfer of plasmid pCF10 in Enterococcus faecalis: probing the genetic and molecular basis for specificity of the pheromone response. Peptides 22, 1529?1539 (2001).
  CAS PubMed Google Scholar
• Diaz, E. Bacterial degradation of aromatic pollutants: a paradigm of metabolic versatility. Int. Microbiol. 7, 173?180 (2004).
  CAS PubMed Google Scholar
• Lewenza, S., Visser, M. B. & Sokol, P. A. Interspecies communication between Burkholderia cepacia and Pseudomonas aeruginosa. Can. J. Microbiol. 48, 707?716 (2002).
  CAS PubMed Google Scholar
• Riedel, K. et al. _N_-acylhomoserine-lactone-mediated communication between Pseudomonas aeruginosa and Burkholderia cepacia in mixed biofilms. Microbiology 147, 3249?3262 (2001).
  CAS PubMed Google Scholar
• Chambers, C. E., Visser, M. B., Schwab, U. & Sokol, P. A. Identification of _N_-acylhomoserine lactones in mucopurulent respiratory secretions from cystic fibrosis patients. FEMS Microbiol. Lett. 244, 297?304 (2005).
  CAS PubMed Google Scholar
• Geisenberger, O. et al. Production of _N_-acyl-L-homoserine lactones by P. aeruginosa isolates from chronic lung infections associated with cystic fibrosis. FEMS Microbiol. Lett. 184, 273?278 (2000).
  CAS PubMed Google Scholar
• Romano, J. D. & Kolter, R. Pseudomonas?Saccharomyces interactions: influence of fungal metabolism on bacterial physiology and survival. J. Bacteriol. 187, 940?948 (2005).
  CAS PubMed PubMed Central Google Scholar
• DeLoney-Marino, C. R., Wolfe, A. J. & Visick, K. L. Chemoattraction of Vibrio fischeri to serine, nucleosides, and _N_-acetylneuraminic acid, a component of squid light-organ mucus. Appl. Environ. Microbiol. 69, 7527?7530 (2003).
  CAS PubMed PubMed Central Google Scholar
• Graf, J., Dunlap, P. V. & Ruby, E. G. Effect of transposon-induced motility mutations on colonization of the host light organ by Vibrio fischeri. J. Bacteriol. 176, 6986?6991 (1994).
  CAS PubMed PubMed Central Google Scholar
• Millikan, D. S. & Ruby, E. G. Alterations in Vibrio fischeri motility correlate with a delay in symbiosis initiation and are associated with additional symbiotic colonization defects. Appl. Environ. Microbiol. 68, 2519?2528 (2002).
  CAS PubMed PubMed Central Google Scholar
• Lupp, C. & Ruby, E. G. Vibrio fischeri uses two quorum-sensing systems for the regulation of early and late colonization factors. J. Bacteriol. 187, 3620?3629 (2005).
  CAS PubMed PubMed Central Google Scholar
• Lupp, C. & Ruby, E. G. Vibrio fischeri LuxS and AinS: comparative study of two signal synthases. J. Bacteriol. 186, 3873?3881 (2004).
  CAS PubMed PubMed Central Google Scholar
• Doino, J. & McFall-Ngai, M. transient exposure to symbiosis-competent bacteria induces light organ morphogenesis in the host squid. Biol. Bull. 189, 347?355 (1995).
  CAS PubMed Google Scholar
• Doino Lemus, J. & McFall-Ngai, M. J. Alterations in the proteome of the Euprymna scolopes light organ in response to symbiotic Vibrio fischeri. Appl. Environ. Microbiol. 66, 4091?4097 (2000).
  CAS PubMed PubMed Central Google Scholar
• Foster, J. S., Apicella, M. A. & McFall-Ngai, M. J. Vibrio fischeri lipopolysaccharide induces developmental apoptosis, but not complete morphogenesis, of the Euprymna scolopes symbiotic light organ. Dev. Biol. 226, 242?254 (2000).
  CAS PubMed Google Scholar
• Visick, K. L., Foster, J., Doino, J., McFall-Ngai, M. & Ruby, E. G. Vibrio fischeri lux genes play an important role in colonization and development of the host light organ. J. Bacteriol. 182, 4578?4586 (2000).
  CAS PubMed PubMed Central Google Scholar
• Ruby, E. G. & McFall-Ngai, M. J. Oxygen-utilizing reactions and symbiotic colonization of the squid light organ by Vibrio fischeri. Trends Microbiol. 7, 414?420 (1999).
  CAS PubMed Google Scholar
• Kiers, E. T., Rousseau, R. A., West, S. A. & Denison, R. F. Host sanctions and the legume?Rhizobium mutualism. Nature 425, 78?81 (2003).
  CAS PubMed Google Scholar
• Li, L., Hooi, D., Chhabra, S. R., Pritchard, D. & Shaw, P. E. Bacterial _N_-acylhomoserine lactone-induced apoptosis in breast carcinoma cells correlated with down-modulation of STAT3. Oncogene 23, 4894?4902 (2004).
  CAS PubMed Google Scholar
• Tateda, K. et al. The Pseudomonas aeruginosa autoinducer _N_-3-oxododecanoyl homoserine lactone accelerates apoptosis in macrophages and neutrophils. Infect. Immun. 71, 5785?5793 (2003).
  CAS PubMed PubMed Central Google Scholar
• Ritchie, A. J. et al. The Pseudomonas aeruginosa quorum-sensing molecule _N_-3-(oxododecanoyl)-L-homoserine lactone inhibits T-cell differentiation and cytokine production by a mechanism involving an early step in T-cell activation. Infect. Immun. 73, 1648?1655 (2005).
  CAS PubMed PubMed Central Google Scholar
• Smith, R. S., Kelly, R., Iglewski, B. H. & Phipps, R. P. The Pseudomonas autoinducer _N_-(3-oxododecanoyl) homoserine lactone induces cyclooxygenase-2 and prostaglandin E2 production in human lung fibroblasts: implications for inflammation. J. Immunol. 169, 2636?2642 (2002).
  CAS PubMed Google Scholar
• Telford, G. et al. The Pseudomonas aeruginosa quorum-sensing signal molecule _N_-(3-oxododecanoyl)-L-homoserine lactone has immunomodulatory activity. Infect. Immun. 66, 36?42 (1998).
  CAS PubMed PubMed Central Google Scholar
• Hooi, D. S., Bycroft, B. W., Chhabra, S. R., Williams, P. & Pritchard, D. I. Differential immune modulatory activity of Pseudomonas aeruginosa quorum-sensing signal molecules. Infect. Immun. 72, 6463?6470 (2004).
  CAS PubMed PubMed Central Google Scholar
• Chun, C. K., Ozer, E. A., Welsh, M. J., Zabner, J. & Greenberg, E. P. Inactivation of a Pseudomonas aeruginosa quorum-sensing signal by human airway epithelia. Proc. Natl Acad. Sci. USA 101, 3587?3590 (2004).
  CAS PubMed PubMed Central Google Scholar
• Givskov, M. et al. Eukaryotic interference with homoserine lactone-mediated prokaryotic signalling. J. Bacteriol. 178, 6618?6622 (1996).
  CAS PubMed PubMed Central Google Scholar
• Manefield, M. et al. Evidence that halogenated furanones from Delisea pulchra inhibit acylated homoserine lactone (AHL)-mediated gene expression by displacing the AHL signal from its receptor protein. Microbiology 145, 283?291 (1999).
  CAS PubMed Google Scholar
• Solomon, J. M., Lazazzera, B. A. & Grossman, A. D. Purification and characterization of an extracellular peptide factor that affects two different developmental pathways in Bacillus subtilis. Genes Dev. 10, 2014?2024 (1996).
  CAS PubMed Google Scholar
• Tummler, B. et al. Infections with Pseudomonas aeruginosa in patients with cystic fibrosis. Behring Inst. Mitt. 98, 249?255 (1997).
  Google Scholar
• Schaber, J. A. et al. Analysis of quorum sensing-deficient clinical isolates of Pseudomonas aeruginosa. J. Med. Microbiol. 53, 841?853 (2004).
  CAS PubMed Google Scholar
• Blehert, D. S., Palmer, R. J. Jr, Xavier, J. B., Almeida, J. S. & Kolenbrander, P. E. Autoinducer 2 production by Streptococcus gordonii DL1 and the biofilm phenotype of a luxS mutant are influenced by nutritional conditions. J. Bacteriol. 185, 4851?4860 (2003).
  CAS PubMed PubMed Central Google Scholar
• McNab, R. et al. LuxS-based signaling in Streptococcus gordonii: autoinducer 2 controls carbohydrate metabolism and biofilm formation with Porphyromonas gingivalis. J. Bacteriol. 185, 274?284 (2003).
  CAS PubMed PubMed Central Google Scholar
• Li, Y. H., Lau, P. C., Lee, J. H., Ellen, R. P. & Cvitkovitch, D. G. Natural genetic transformation of Streptococcus mutans growing in biofilms. J. Bacteriol. 183, 897?908 (2001).
  CAS PubMed PubMed Central Google Scholar
• Li, Y. H. et al. A quorum-sensing signaling system essential for genetic competence in Streptococcus mutans is involved in biofilm formation. J. Bacteriol. 184, 2699?2708 (2002).
  CAS PubMed PubMed Central Google Scholar