gplots: Various R Programming Tools for Plotting Data (original) (raw)

Various R programming tools for plotting data, including: - calculating and plotting locally smoothed summary function as ('bandplot', 'wapply'), - enhanced versions of standard plots ('barplot2', 'boxplot2', 'heatmap.2', 'smartlegend'), - manipulating colors ('col2hex', 'colorpanel', 'redgreen', 'greenred', 'bluered', 'redblue', 'rich.colors'), - calculating and plotting two-dimensional data summaries ('ci2d', 'hist2d'), - enhanced regression diagnostic plots ('lmplot2', 'residplot'), - formula-enabled interface to 'stats::lowess' function ('lowess'), - displaying textual data in plots ('textplot', 'sinkplot'), - plotting dots whose size reflects the relative magnitude of the elements ('balloonplot', 'bubbleplot'), - plotting "Venn" diagrams ('venn'), - displaying Open-Office style plots ('ooplot'), - plotting multiple data on same region, with separate axes ('overplot'), - plotting means and confidence intervals ('plotCI', 'plotmeans'), - spacing points in an x-y plot so they don't overlap ('space').

Version:	3.2.0
Depends:	R (≥ 3.0)
Imports:	gtools, stats, caTools, KernSmooth, methods
Suggests:	grid, MASS, knitr, rmarkdown, r2d2, nlme
Published:	2024-10-05
DOI:	10.32614/CRAN.package.gplots
Author:	Gregory R. Warnes [aut], Ben Bolker [aut], Lodewijk Bonebakker [aut], Robert Gentleman [aut], Wolfgang Huber [aut], Andy Liaw [aut], Thomas Lumley [aut], Martin Maechler [aut], Arni Magnusson [aut], Steffen Moeller [aut], Marc Schwartz [aut], Bill Venables [aut], Tal Galili [aut, cre]
Maintainer:	Tal Galili <tal.galili at gmail.com>
BugReports:	https://github.com/talgalili/gplots/issues
License:	GPL-2
URL:	https://github.com/talgalili/gplots,https://talgalili.github.io/gplots/
NeedsCompilation:	no
Materials:	README NEWS
CRAN checks:	gplots results

Documentation:

Downloads:

Reverse dependencies:

Reverse depends:	BayesianMediationA, bayess, cellVolumeDist, corkscrew, DandEFA, DensParcorr, difconet, EBSeq, GSCA, HD2013SGI, hdbma, Hiiragi2013, iCheck, made4, massiR, MBttest, MDplot, MetabolAnalyze, MethTargetedNGS, mgsa, mlma, mma, MOQA, NestLink, PRISMA, RCA, RnBeads, SCINA, swamp, switchBox, tRanslatome
Reverse imports:	a4Base, affycoretools, artMS, ASSIGN, asymmetry, BAMMtools, bingat, boundingbox, BSPBSS, BUScorrect, BUSseq, CaDrA, cbaf, CellScore, ChIPseeker, CINdex, CJIVE, CluMSID, CNVPanelizer, CoGAPS, cogena, colordistance, compcodeR, compEpiTools, CoNI, consensus, corto, covid19.analytics, crmReg, crqa, cytoMEM, dar, debrowser, DepecheR, DeSousa2013, DiffBind, DmelSGI, DNMF, DPBBM, EGAD, EGSEA, ENmix, erccdashboard, FAMetA, fDMA, flagme, Fletcher2013a, flowCyBar, flowDensity, fst4pg, fusedMGM, GDCRNATools, GeneOverlap, GOexpress, graphsim, HIREewas, HMP, ideal, indirect, iNETgrate, infercnv, ionr, isomiRs, kissDE, KSEAapp, les, LSDirf, M3Drop, MAIT, metaGE, metagenomeSeq, MetaNeighbor, metaseqR2, methylPipe, MetProc, MicrobiomeSurv, MigConnectivity, miRLAB, mitch, MLP, MLZ, mmabig, mogsa, Moonlight2R, MoonlightR, msmsEDA, MSstats, MSstatsShiny, MultBiplotR, MultiGroupO, multiUS, NCA, nearBynding, netZooR, omXplore, PAA, Path.Analysis, Patterns, phenoTest, piano, plotMCMC, polimetrics, poliscidata, PolySTest, proActiv, Prostar, r.jive, RAMClustR, RCDT, rcellminer, RcmdrPlugin.BiclustGUI, RCy3, rdi, ReactomeGSA, Repitools, rexposome, rgsepd, RITAN, RNAdecay, roastgsa, RobMixReg, ROCR, RPPanalyzer, rSRD, SAMtool, scMultiSim, scone, SCOPE, serieslcb, sesem, shinyepico, shinyMobile, signatureSurvival, sigQC, SingleCellSignalR, sRACIPE, STATegRa, STRINGdb, TFARM, tigre, TIMP, tmod, TopKLists, Trendy, TSCAN, uSORT, vannstats, variancePartition, vulcan, washeR, wilson, yarn
Reverse suggests:	AgiMicroRna, airpart, BayesMultMeta, BioQC, ChemmineR, ChIPpeakAnno, clusternomics, cola, ComplexHeatmap, condvis, CTD, DAPAR, dartR.base, dartR.captive, dartR.popgen, dartR.spatial, dendextend, dendsort, enveomics.R, FRESA.CAD, gmodels, gtools, heatmaply, heplots, HistData, httk, InteractiveComplexHeatmap, interactiveDisplay, IPV, isobar, limma, Linnorm, MAnorm2, MCbiclust, metamicrobiomeR, MKmisc, MoBPS, MSnbase, multiClust, OmicsPLS, projectR, psichomics, PtH2O2lipids, QFeatures, r4ss, rattle, RcisTarget, RegionalST, RforProteomics, RMassBank, scPloidy, sensitivity, sim1000G, Single.mTEC.Transcriptomes, spatialHeatmap, survClust, TargetScore, TargetScoreData, timeOmics, TOAST, varrank
Reverse enhances:	caroline

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