Comparative analysis of the functional genome architecture of animal andplant cell nuclei (original) (raw)
Aten JA, Bakker PJM, Stap J, Boschmann GA, Veenhof CHN (1992) DNA double labelling with IdUrd and CldUrd for spatial and temporal analysis of cell proliferation and DNA replication. Histochemical J 24: 251-259. ArticleCAS Google Scholar
Aten JA, Stap J, Manders EMM, Bakker PJM (1993) Progression of DNA-replication in cell nuclei and changes in cell proliferation investigated by DNA double-labelling with IdUrd and CldUrd. Eur J Histochem 37: 65-71. Google Scholar
Barnes SA, James AM, Jamieson G (1985) The organization, nucleotide sequence, and chromosomal distribution of satellite DNA from Allium cepa. Chromosoma 92: 185-192. ArticleCAS Google Scholar
Berezney R, Mortillaro MJ, Ma H, Wei X, Samarabandu J (1995) The nuclear matrix: A structural milieu for genomic function. Int Rev Cytol 162A: 1-65. ArticlePubMedCAS Google Scholar
Brown KE, Guest SS, Smale ST, Hahm K, Merkenschlager M, Fisher AG (1997) Association of transcriptionally silent genes with Ikaros complexes at centromeric heterochromatin. Cell 91: 845-854. ArticlePubMedCAS Google Scholar
Chubb JR, Boyle S, Perry P, Bickmore WA (2002) Chromatin motion is constrained by association with nuclear compartments in human cells. J Cell Biol 12: 439-445. CAS Google Scholar
Cockell M, Gasser SM (1999) Nuclear compartments and gene regulation. Curr Opin Genet Dev 9: 199-205. ArticlePubMedCAS Google Scholar
Csink AK, Henikoff S (1996) Genetic modification of heterochromatic association and nuclear organization in Drosophila. Nature 381: 529-531. ArticlePubMedCAS Google Scholar
de Jong L, Grande MA, Mattern KA, Schul W, van Driel R (1996) Nuclear domains involved in RNA synthesis, RNA processing, and replication. Crit Rev Eukar Gene Exp 6: 215-246. CAS Google Scholar
Dernburg AF, Broman KW, Fung JC et al. (1996) Perturbation of nuclear architecture by long-distance chromosome interactions. Cell 85: 745759. Article Google Scholar
Eils R, Dietzel S, Bertin E et al. (1996) Three-dimensional reconstruction of painted human interphase chromosomes: active and inactive X chromosome territories have similar volumes but di¡er in shape and surface structure. J Cell Biol 135: 1427-1440. ArticlePubMedCAS Google Scholar
Elgin SCR (1996) Heterochromatin and gene regulation in Drosophila. Curr Opin Genet Dev 6: 193-202. ArticlePubMedCAS Google Scholar
Ferreira J, Paolella G, Ramos C, Lamond AI (1997) Spatial organization of large-scale chromatin domains in the nucleus: a magnified view of single chromosome territories. J Cell Biol 139: 1597-1610. ArticlePubMedCAS Google Scholar
Francastel C, Schuebeler D, Martin DIK, Groudine M (2000) Nuclear compartmentalization and gene activity. Nat Rev Mol Cell Biol 1: 137-143. ArticlePubMedCAS Google Scholar
Fuchs J, Kühne M, Schubert I (1998) Assignment of linkage groups to pea chromosomes after karyotyping and gene mapping by fluorescent in situ hybridization. Chromosoma 107: 272-276. ArticlePubMedCAS Google Scholar
Gasser SM (2001) Positions of potential: nuclear organization and gene expression. Cell 104: 639-642. ArticlePubMedCAS Google Scholar
Heun P, Laroche T, Raghuraman MK, Gasser SM (2001) The positioning and dynamics of origins of replication in the budding yeast nucleus. J Cell Biol 152: 385-400. ArticlePubMedCAS Google Scholar
James TC, Elgin SCR (1986) Identification of nonhistone chromosomal protein associated with heterochromatin in Drosophila and its gene. Mol Cell Biol 6: 3862-3872. PubMedCAS Google Scholar
James TC, Eissenberg JC, Craig C, Dietrich V, Hobson A, Elgin SCR (1989) Distribution patterns of HP1, a hetrochromatinassociated nonhistone chromosomal protein of Drosophila. Eur J Cell Biol 50: 170-180. PubMedCAS Google Scholar
Jasencakova Z, Meister A, Walter J, Turner BM, Schubert I (2000) Histone H4 acetylation of euchromatin and heterochromatin is cell cycle dependent and correlated with replication rather than with transcription. Plant Cell 12: 2087-2100. ArticlePubMedCAS Google Scholar
Jasencakova Z, Meister A, Schubert I (2001) Chromatin organization and its relation to replication and histone acetylation during the cell cycle in barley. Chromosoma 110: 83-92. PubMedCAS Google Scholar
Lamm R (1981) Giemsa C-banding and silver-staining for cytological studies in Pisum. Hereditas 94: 45-52. Article Google Scholar
Leonhardt H, Rahn H-P, Weinzierl P et al. (2000) Dynamics of DNA replication factories in living cells. J Cell Biol 149:271-279. ArticlePubMedCAS Google Scholar
Ma H, Samarabandu J, Devdhar RS et al. (1998) Spatial and temporal dynamics of DNA replication sites in mammalian cells. J Cell Biol 143: 1415-1425. ArticlePubMedCAS Google Scholar
Maillet L, Boscheron C, Gotta M, Marcand S, Gilson E, Gasser SM (1996) Evidence for silencing compartments within the yeast nucleus: a role for telomere proximity and Sir protein concentration in silencer-mediated repression. Genes Dev 10: 1796-1811. PubMedCAS Google Scholar
Manders EMM, Stap J, Brakenhoff GJ, van Driel R, A ten JA (1992) Dynamics of three-dimensional replication patterns during S-phase, analysed by double labelling ofDNAand confocal microscopy. J Cell Science 103: 857-862. PubMedCAS Google Scholar
Manders EMM, Stap J, Strackee J, van Driel R, Aten JA (1996) Dynamic behaviour of DNA replication domains. Exp Cell Res 226: 328-335. ArticlePubMedCAS Google Scholar
Marshall WF, Straight A, Marko JF et al. (1997) Interphase chromosomes undergo constrained di¡usional motion in living cells. Curr Biol 7: 930-939. ArticlePubMedCAS Google Scholar
Nakayasu H, Berezney R (1989) Mapping replicational sites in the eucaryotic cell nucleus. J Cell Biol 108: 1-11. ArticlePubMedCAS Google Scholar
O'Keefe RT, Henderson SC, SpectorDL(1992) Dynamic organization of DNA replication in mammalian cell nuclei: spatially and temporally defined replication of chromosome-specific a-satellite DNA sequences. J Cell Biol 116: 1095-1110. Google Scholar
Pich U, Schubert I (1993) Polymorphism of legumin genes in inbred lines of Vicia faber. Biol Zentbl 112: 342-350. CAS Google Scholar
Pich U, Fuchs J, Schubert I (1996) How do Alliaceae stabilize their chromosome ends in the absence of TTTAGGG sequences? Chromosome Res 4: 207-213. ArticlePubMedCAS Google Scholar
Rabl C(1885) Über Zelltheilung. Morphol Jahrbuch 10: 214-330.
Sadoni N, Langer S, Fauth C et al. (1999) Nuclear organization of mammalian genomes: polar chromosome territories build up functionally distinct higher order compartments. J Cell Biol 146: 1211-1226. ArticlePubMedCAS Google Scholar
Schübeler D, Francastel C, Cimbora DM, Reik A, Martin DIK, Groudine M (2000) Nuclear localization and histone acetylation: a pathway for chromatin opening and transcriptional activation of the human b-globin locus. Genes Dev 14: 940-950. PubMed Google Scholar
Schübeler D, Scalzo D, Kooperberg C, van Steensel B, Delrow J, Groudine M(2002) Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing. Nat Genet 32: 438-442. ArticlePubMedCAS Google Scholar
Skok JA, Brown KE, Azuara V et al. (2001) Nonequivalent nuclear location of immunoglobulin alleles in B lymphocytes. Nat Immunol 2: 825-826. ArticleCAS Google Scholar
Sobel RE, Cook RG, Perry CA, Annunciato AT, Allis CD (1995) Conservation of deposition-related acetylation sites in newly synthesized histones H3 and H4. Proc Natl Acad Sci USA 92: 1237-1241. ArticlePubMedCAS Google Scholar
Taddei A, Roche D, Sibarita JB, Turner BM, Almouzni G(1999) Duplication and maintenance of heterochromatin domains. J Cell Biol 147: 1153-1166. ArticlePubMedCAS Google Scholar
Turner BM, Birley AJ, Lavender J (1992) Histone H4 isoforms acetylated at specific lysine residues define individual chromosomes and chromatin domains in Drosophila polytene nuclei. Cell 69: 375-384. ArticlePubMedCAS Google Scholar
Zink D, Cremer T, Sa¡rich R et al. (1998) Structure and dynamics of human interphase chromosome territories in vivo. Hum Genet 102: 241-251 ArticlePubMedCAS Google Scholar