Regulation of T cell receptor-α gene recombination by transcription (original) (raw)
Bassing, C.H., Swat, W. & Alt, F.W. The mechanism and regulation of chromosomal V(D)J recombination. Cell109, S45–S55 (2002). ArticleCASPubMed Google Scholar
Yancopoulos, G.D. & Alt, F.W. Developmentally controlled and tissue-specific expression of unrearranged VH gene segments. Cell40, 271–281 (1985). ArticleCASPubMed Google Scholar
Stanhope-Baker, P., Hudson, K.M., Shaffer, A.L., Constantinescu, A. & Schlissel, M.S. Cell type-specific chromatin structure determines the targeting of V(D)J recombinase activity in vitro. Cell85, 887–897 (1996). ArticleCASPubMed Google Scholar
Hesslein, D.G. & Schatz, D.G. Factors and forces controlling V(D)J recombination. Adv. Immunol.78, 169–232 (2001). ArticleCASPubMed Google Scholar
Sikes, M.L., Meade, A., Tripathi, R., Krangel, M.S. & Oltz, E.M. Regulation of V(D)J recombination: a dominant role for promoter positioning in gene segment accessibility. Proc. Natl. Acad. Sci. USA99, 12309–12314 (2002). ArticleCASPubMedPubMed Central Google Scholar
Tripathi, R.K. et al. Definition of a T-cell receptor β gene core enhancer of V(D)J recombination by transgenic mapping. Mol. Cell. Biol.20, 42–53 (2000). ArticleCASPubMed CentralPubMed Google Scholar
Fernex, C., Capone, M. & Ferrier, P. The V(D)J recombinational and transcriptional activities of the immunoglobulin heavy-chain intronic enhancer can be mediated through distinct protein-binding sites in a transgenic substrate. Mol. Cell. Biol.15, 3217–3226 (1995). ArticleCASPubMed CentralPubMed Google Scholar
Angelin-Duclos, C. & Calame, K. Evidence that immunoglobulin VH-DJ recombination does not require germ line transcription of the recombining variable gene segment. Mol. Cell. Biol.18, 6253–6264 (1998). ArticleCASPubMed CentralPubMed Google Scholar
Okada, A., Mendelsohn, M. & Alt, F. Differential activation of transcription versus recombination of transgenic T cell receptor β variable region gene segments in B and T lineage cells. J. Exp. Med.180, 261–272 (1994). ArticleCASPubMed Google Scholar
Krangel, M.S. Gene segment selection in V(D)J recombination: accessibility and beyond. Nat. Immunol.4, 624–630 (2003). ArticleCASPubMed Google Scholar
Bouvier, G. et al. Deletion of the mouse T-cell receptor β gene enhancer blocks αβ T-cell development. Proc. Natl. Acad. Sci. USA93, 7877–7881 (1996). ArticleCASPubMed CentralPubMed Google Scholar
Sleckman, B.P., Bardon, C.G., Ferrini, R., Davidson, L. & Alt, F.W. Function of the TCR α enhancer in αβ and γδ T cells. Immunity7, 505–515 (1997). ArticleCASPubMed Google Scholar
Whitehurst, C.E., Chattopadhyay, S. & Chen, J. Control of V(D)J recombinational accessibility of the Dβ1 gene segment at the TCR β locus by a germline promoter. Immunity10, 313–322 (1999). ArticleCASPubMed Google Scholar
Villey, I., Caillol, D., Selz, F., Ferrier, P. & de Villartay, J.-P. Defect in rearrangement of the most 5′ TCR-Jα following targeted deletion of T early α (TEA): implications for TCR α locus accessibility. Immunity5, 331–342 (1996). ArticleCASPubMed Google Scholar
Oestreich, K.J. et al. Regulation of TCR β gene assembly by a promoter/enhancer holocomplex. Immunity24, 381–391 (2006). ArticleCASPubMed Google Scholar
Weinmann, A.S., Plevy, S.E. & Smale, S.T. Rapid and selective remodeling of a positioned nucleosome during the induction of IL-12 p40 transcription. Immunity11, 665–675 (1999). ArticleCASPubMed Google Scholar
Agalioti, T. et al. Ordered recruitment of chromatin modifying and general transcription factors to the IFN-β promoter. Cell103, 667–678 (2000). ArticleCASPubMed Google Scholar
Krogan, N.J. et al. The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation. Mol. Cell11, 721–729 (2003). ArticleCASPubMed Google Scholar
Ng, H.H., Robert, F., Young, R.A. & Struhl, K. Targeted recruitment of Set1 histone methyltransferase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. Mol. Cell11, 709–719 (2003). ArticleCASPubMed Google Scholar
Wittschieben, B.O. et al. A novel histone acetyltransferase is an integral subunit of elongating RNA polymerase II holoenzyme. Mol. Cell4, 123–128 (1999). ArticleCASPubMed Google Scholar
Belotserkovskaya, R. et al. FACT facilitates transcription-dependent nucleosome alteration. Science301, 1090–1093 (2003). ArticleCASPubMed Google Scholar
Schwabish, M.A. & Struhl, K. Asf1 mediates histone eviction and deposition during elongation by RNA polymerase II. Mol. Cell22, 415–422 (2006). ArticleCASPubMed Google Scholar
Kristjuhan, A. & Svejstrup, J.Q. Evidence for distinct mechanisms facilitating transcript elongation through chromatin in vivo. EMBO J.23, 4243–4252 (2004). ArticleCASPubMed CentralPubMed Google Scholar
Gribnau, J., Diderich, K., Pruzina, S., Calzolari, R. & Fraser, P. Intergenic transcription and developmental remodeling of chromatin subdomains in the human β-globin locus. Mol. Cell5, 377–386 (2000). ArticleCASPubMed Google Scholar
Krangel, M.S., Carabana, J., Abarrategui, I., Schlimgen, R. & Hawwari, A. Enforcing order within a complex locus: current perspectives on the control of V(D)J recombination at the murine T-cell receptor α/δ locus. Immunol. Rev.200, 224–232 (2004). ArticleCASPubMed Google Scholar
Thompson, S.D., Pelkonen, J. & Hurwitz, J.L. First T cell receptor α gene rearrangements during T cell ontogeny skew to the 5′ region of the Jα locus. J. Immunol.145, 2347–2352 (1990). CASPubMed Google Scholar
Petrie, H.T., Livak, F., Burtrum, D. & Mazel, S. T cell receptor gene recombination patterns and mechanisms: cell death, rescue, and T cell production. J. Exp. Med.182, 121–127 (1995). ArticleCASPubMed Google Scholar
Guo, J. et al. Regulation of the TCR α repertoire by the survival window of CD4+CD8+ thymocytes. Nat. Immunol.3, 469–476 (2002). ArticlePubMed Google Scholar
Wang, F., Huang, C.Y. & Kanagawa, O. Rapid deletion of rearranged T cell antigen receptor (TCR) Vα-Jα segment by secondary rearrangement in the thymus: role of continuous rearrangement of TCR α chain gene and positive selection in the T cell repertoire formation. Proc. Natl. Acad. Sci. USA95, 11834–11839 (1998). ArticleCASPubMedPubMed Central Google Scholar
Buch, T., Rieux-Laucat, F., Forster, I. & Rajewsky, K. Failure of HY-specific thymocytes to escape negative selection by receptor editing. Immunity16, 707–718 (2002). ArticleCASPubMed Google Scholar
Hawwari, A., Bock, C. & Krangel, M.S. Regulation of T cell receptor α gene assembly by a complex hierarchy of germline Jα promoters. Nat. Immunol.6, 481–489 (2005). ArticleCASPubMed CentralPubMed Google Scholar
Mauvieux, L., Villey, I. & de Villartay, J-P. TEA regulates local TCR-Jα accessibility through histone acetylation. Eur. J. Immunol.33, 2216–2222 (2003). ArticleCASPubMed Google Scholar
Deuschle, U., Hipskind, R.A. & Bujard, H. RNA polymerase II transcription blocked by Escherichia coli Lac repressor. Science248, 480–483 (1990). ArticleCASPubMed Google Scholar
Yonaha, M. & Proudfoot, N.J. Specific transcriptional pausing activates polyadenylation in a coupled in vitro system. Mol. Cell3, 593–600 (1999). ArticleCASPubMed Google Scholar
Gromak, N., West, S. & Proudfoot, N.J. Pause sites promote transcriptional termination of mammalian RNA polymerase II. Mol. Cell. Biol.26, 3986–3996 (2006). ArticleCASPubMed CentralPubMed Google Scholar
McMurry, M.T. & Krangel, M.S. A role for histone acetylation in the developmental regulation of VDJ recombination. Science287, 495–498 (2000). ArticleCASPubMed Google Scholar
Foley, K.P. & Engel, J.D. Individual stage selector element mutations lead to reciprocal changes in β- vs. ε-globin gene transcription: genetic confirmation of promoter competition during globin gene switching. Genes Dev.6, 730–744 (1992). ArticleCASPubMed Google Scholar
Cullen, B.R., Lomedico, P.T. & Ju, G. Transcriptional interferece in avian retroviruses- implications for the promoter insertion model of leukaemogenesis. Nature307, 241–245 (1984). ArticleCASPubMed Google Scholar
Corbin, V. & Maniatis, T. Role of transcriptional interference in the Drosophila melanogaster Adh promoter switch. Nature337, 279–282 (1989). ArticleCASPubMed Google Scholar
Martens, J.A., Laprade, L. & Winston, F. Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene. Nature429, 571–574 (2004). ArticleCASPubMed Google Scholar
Santos-Rosa, H. et al. Methylation of histone H3 K4 mediates association of the Isw1p ATPase with chromatin. Mol. Cell12, 1325–1332 (2003). ArticleCASPubMed Google Scholar
Kaplan, C.D., Laprade, L. & Winston, F. Transcription elongation factors repress transcription initiation from cryptic sites. Science301, 1096–1099 (2003). ArticleCASPubMed Google Scholar
Carrozza, M.J. et al. Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription. Cell123, 581–592 (2005). ArticleCASPubMed Google Scholar
Zhang, Z. et al. Transcription factor Pax5 (BSAP) transactivates the RAG-mediated VH-to-DJH rearrangement of immunoglobulin genes. Nat. Immunol.7, 616–624 (2006). ArticleCASPubMed Google Scholar
Chaudhuri, J. & Alt, F.W. Class-switch recombination: interplay of transcription, DNA deamination and DNA repair. Nat. Rev. Immunol.4, 541–550 (2004). ArticleCASPubMed Google Scholar
Dudley, D.D., Chaudhuri, J., Bassing, C.H. & Alt, F.W. Mechanism and control of V(D)J recombination versus class switch recombination: similarities and differences. Adv. Immunol.86, 43–112 (2005). ArticleCASPubMed Google Scholar