The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier–Gorlin syndrome (original) (raw)
Taverna, S. D., Li, H., Ruthenburg, A. J., Allis, C. D. & Patel, D. J. How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers. Nature Struct. Mol. Biol.14, 1025–1040 (2007) ArticleCAS Google Scholar
Duncker, B. P., Chesnokov, I. N. & McConkey, B. J. The origin recognition complex protein family. Genome Biol.10, 214 (2009) Article Google Scholar
Bicknell, L. S. et al. Mutations in the pre-replication complex cause Meier-Gorlin syndrome. Nature Genet.43, 356–359 (2011) ArticleCAS Google Scholar
Bicknell, L. S. et al. Mutations in ORC1, encoding the largest subunit of the origin recognition complex, cause microcephalic primordial dwarfism resembling Meier-Gorlin syndrome. Nature Genet.43, 350–355 (2011) ArticleCAS Google Scholar
Klingseisen, A. & Jackson, A. P. Mechanisms and pathways of growth failure in primordial dwarfism. Genes Dev.25, 2011–2024 (2011) ArticleCAS Google Scholar
Kouzarides, T. Chromatin modifications and their function. Cell128, 693–705 (2007) ArticleCAS Google Scholar
Callebaut, I., Courvalin, J. C. & Mornon, J. P. The BAH (bromo-adjacent homology) domain: a link between DNA methylation, replication and transcriptional regulation. FEBS Lett.446, 189–193 (1999) ArticleCAS Google Scholar
Onishi, M., Liou, G. G., Buchberger, J. R., Walz, T. & Moazed, D. Role of the conserved Sir3-BAH domain in nucleosome binding and silent chromatin assembly. Mol. Cell28, 1015–1028 (2007) ArticleCAS Google Scholar
Sampath, V. et al. Mutational analysis of the Sir3 BAH domain reveals multiple points of interaction with nucleosomes. Mol. Cell. Biol.29, 2532–2545 (2009) ArticleCAS Google Scholar
Armache, K. J., Garlick, J. D., Canzio, D., Narlikar, G. J. & Kingston, R. E. Structural basis of silencing: Sir3 BAH domain in complex with a nucleosome at 3.0 Å resolution. Science334, 977–982 (2011) ArticleADSCAS Google Scholar
Bua, D. J. et al. Epigenome microarray platform for proteome-wide dissection of chromatin-signaling networks. PLoS ONE4, e6789 (2009) ArticleADS Google Scholar
Bell, S. P., Mitchell, J., Leber, J., Kobayashi, R. & Stillman, B. The multidomain structure of Orc1p reveals similarity to regulators of DNA replication and transcriptional silencing. Cell83, 563–568 (1995) ArticleCAS Google Scholar
Dorn, E. S. & Cook, J. G. Nucleosomes in the neighborhood: new roles for chromatin modifications in replication origin control. Epigenetics6, 552–559 (2011) ArticleCAS Google Scholar
Bell, S. P. & Dutta, A. DNA replication in eukaryotic cells. Annu. Rev. Biochem.71, 333–374 (2002) ArticleCAS Google Scholar
Zhang, Z., Hayashi, M. K., Merkel, O., Stillman, B. & Xu, R. M. Structure and function of the BAH-containing domain of Orc1p in epigenetic silencing. EMBO J.21, 4600–4611 (2002) ArticleCAS Google Scholar
Botuyan, M. V. et al. Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair. Cell127, 1361–1373 (2006) ArticleCAS Google Scholar
Li, H. et al. Structural basis for lower lysine methylation state-specific readout by MBT repeats of L3MBTL1 and an engineered PHD finger. Mol. Cell28, 677–691 (2007) ArticleCAS Google Scholar
Schotta, G. et al. A chromatin-wide transition to H4K20 monomethylation impairs genome integrity and programmed DNA rearrangements in the mouse. Genes Dev.22, 2048–2061 (2008) ArticleCAS Google Scholar
Noguchi, K., Vassilev, A., Ghosh, S., Yates, J. L. & DePamphilis, M. L. The BAH domain facilitates the ability of human Orc1 protein to activate replication origins in vivo. EMBO J.25, 5372–5382 (2006) ArticleCAS Google Scholar
Tardat, M. et al. The histone H4 Lys 20 methyltransferase PR-Set7 regulates replication origins in mammalian cells. Nature Cell Biol.12, 1086–1093 (2010) ArticleCAS Google Scholar
Tardat, M., Murr, R., Herceg, Z., Sardet, C. & Julien, E. PR-Set7-dependent lysine methylation ensures genome replication and stability through S phase. J. Cell Biol.179, 1413–1426 (2007) ArticleCAS Google Scholar
Miotto, B. & Struhl, K. HBO1 histone acetylase is a coactivator of the replication licensing factor Cdt1. Genes Dev.22, 2633–2638 (2008) ArticleCAS Google Scholar
Kitsberg, D., Selig, S., Keshet, I. & Cedar, H. Replication structure of the human β-globin gene domain. Nature366, 588–590 (1993) ArticleADSCAS Google Scholar
Guernsey, D. L. et al. Mutations in origin recognition complex gene ORC4 cause Meier-Gorlin syndrome. Nature Genet.43, 360–364 (2011) ArticleCAS Google Scholar
Sun, X. J. et al. Genome-wide survey and developmental expression mapping of zebrafish SET domain-containing genes. PLoS ONE3, e1499 (2008) ArticleADS Google Scholar
Costas, C. et al. Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks. Nature Struct. Mol. Biol.18, 395–400 (2011) ArticleCAS Google Scholar
Miotto, B. & Struhl, K. HBO1 histone acetylase activity is essential for DNA replication licensing and inhibited by Geminin. Mol. Cell37, 57–66 (2010) ArticleCAS Google Scholar
Jacob, Y. et al. Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases. Nature466, 987–991 (2010) ArticleADSCAS Google Scholar
Brustel, J., Tardat, M., Kirsh, O., Grimaud, C. & Julien, E. Coupling mitosis to DNA replication: the emerging role of the histone H4-lysine 20 methyltransferase PR-Set7. Trends Cell Biol.21, 452–460 (2011) ArticleCAS Google Scholar
Oda, H. et al. Monomethylation of histone H4-lysine 20 is involved in chromosome structure and stability and is essential for mouse development. Mol. Cell. Biol.29, 2278–2295 (2009) ArticleCAS Google Scholar
Shi, X. et al. ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression. Nature442, 96–99 (2006) ArticleADSCAS Google Scholar
Matthews, A. G. et al. RAG2 PHD finger couples histone H3 lysine 4 trimethylation with V(D)J recombination. Nature450, 1106–1110 (2007) ArticleADSCAS Google Scholar
Adams, P. D. et al. PHENIX: building new software for automated crystallographic structure determination. Acta Crystallogr. D58, 1948–1954 (2002) Article Google Scholar
Emsley, P. & Cowtan, K. Coot: model-building tools for molecular graphics. Acta Crystallogr. D60, 2126–2132 (2004) Article Google Scholar
McCoy, A. J. et al. Phaser crystallographic software. J. Appl. Cryst.40, 658–674 (2007) ArticleCAS Google Scholar
Mendez, J. & Stillman, B. Chromatin association of human origin recognition complex, Cdc6, and minichromosome maintenance proteins during the cell cycle: assembly of prereplication complexes in late mitosis. Mol. Cell. Biol.20, 8602–8612 (2000) ArticleCAS Google Scholar
Kuo, A. J. et al. NSD2 links dimethylation of histone H3 at lysine 36 to oncogenic programming. Mol. Cell44, 609–620 (2011) ArticleCAS Google Scholar