A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica) (original) (raw)

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Acknowledgements

We thank J. Chen from the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, for discussion about the manuscript. We thank Z. Ning for assistance with sequence alignment. This work was supported by the China Agricultural Research System (CARS07-12.5-A02), the National Natural Science Foundation of China (31171560, 30630045 and 31121063), the National High Technology Research and Development Program of China (863 Program) (2013AA102603), the National Fund for Genetically Modified Organisms of China (2009ZX08009-093B), the Ministry of Agriculture of China (2011ZX08009-002) and the Chinese Academy of Sciences.

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Author notes

  1. Guanqing Jia, Xuehui Huang, Hui Zhi and Yan Zhao: These authors contributed equally to this work.

Authors and Affiliations

  1. Institute of Crop Sciences, Chinese Academy of Agricultural Science, Beijing, China
    Guanqing Jia, Hui Zhi, Yang Chai, Lifang Yang, Hangfei Hao, Hongkuan Liu, Ping Lu & Xianmin Diao
  2. National Center for Gene Research, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
    Xuehui Huang, Yan Zhao, Qiang Zhao, Wenjun Li, Kunyan Liu, Hengyun Lu, Chuanrang Zhu, Yiqi Lu, Congcong Zhou, Danlin Fan, Qijun Weng, Yunli Guo, Tao Huang, Lei Zhang, Tingting Lu, Qi Feng & Bin Han
  3. State Key Laboratory of Plant Genomics and National Center for Plant Gene Research (Beijing), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China
    Ning Zhang & Jiayang Li
  4. Institute of Millet Crops, Shanxi Academy of Agricultural Sciences, Changzhi, Shanxi, China
    Yuhui Li & Erhu Guo
  5. Institute of Millet Crops, Anyang Academy of Agricultural Sciences, Anyang, Henan, China
    Shujun Wang, Suying Wang & Jinrong Liu
  6. Institute of Soil and Water Conservation, Liaoning Academy of Agricultural Sciences, Chaoyang, Liaoning, China
    Wenfei Zhang, Guoqiu Chen & Baojin Zhang
  7. Institute of Millet Crops, Hebei Academy of Agricultural and Forestry Sciences, Shijiazhuang, Hebei, China
    Wei Li, Yongfang Wang, Haiquan Li & Xianmin Diao
  8. College of Life Sciences, Hebei Normal University, Shijiazhuang, Hebei, China
    Baohua Zhao & Xianmin Diao

Authors

  1. Guanqing Jia
  2. Xuehui Huang
  3. Hui Zhi
  4. Yan Zhao
  5. Qiang Zhao
  6. Wenjun Li
  7. Yang Chai
  8. Lifang Yang
  9. Kunyan Liu
  10. Hengyun Lu
  11. Chuanrang Zhu
  12. Yiqi Lu
  13. Congcong Zhou
  14. Danlin Fan
  15. Qijun Weng
  16. Yunli Guo
  17. Tao Huang
  18. Lei Zhang
  19. Tingting Lu
  20. Qi Feng
  21. Hangfei Hao
  22. Hongkuan Liu
  23. Ping Lu
  24. Ning Zhang
  25. Yuhui Li
  26. Erhu Guo
  27. Shujun Wang
  28. Suying Wang
  29. Jinrong Liu
  30. Wenfei Zhang
  31. Guoqiu Chen
  32. Baojin Zhang
  33. Wei Li
  34. Yongfang Wang
  35. Haiquan Li
  36. Baohua Zhao
  37. Jiayang Li
  38. Xianmin Diao
  39. Bin Han

Contributions

B.H., X.D. and J. Li conceived the project and its components. H.Z., P.L., B. Zhao and X.D. collected samples. H.Z., G.J., H. Liu, Y.C., Y. Li, E.G., Shujun Wang, J.L., Suying Wang, W.Z., G.C., B. Zhang, L.Y., H.H., Y.W., Wei Li, N.Z. and H. Li performed the phenotyping. L.Z. contributed to evolutionary and functional analyses. G.J., Wenjun Li, Y.G., Y. Lu, C. Zhou, D.F., Q.W. and Q.F. performed the genome sequencing. X.H. and Y.Z. performed GWAS and population genetics analysis. Q.Z., K.L., H. Lu, C. Zhu, T.H., L.Z. and T.L. performed genome data analysis. Y.Z. and X.H. prepared figures and tables. X.H., X.D. and B.H. analyzed the total data and wrote the paper.

Corresponding authors

Correspondence toJiayang Li, Xianmin Diao or Bin Han.

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The authors declare no competing financial interests.

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Jia, G., Huang, X., Zhi, H. et al. A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica).Nat Genet 45, 957–961 (2013). https://doi.org/10.1038/ng.2673

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