COBRA: combined binary ratio labeling of nucleic-acid probes for multi-color fluorescence in situ hybridization karyotyping (original) (raw)

• Nederlof, P.M. et al. Multiple fluorescence in situ hybridization. Cytometry 11, 126–131 (1990).
  Article CAS PubMed Google Scholar
• Nederlof, P.M., van der Flier, S., Vrolijk, J., Tanke, H.J. & Raap, A.K. Fluorescence ratio measurements of double-labeled probes for multiple in situ hybridization by digital imaging microscopy. Cytometry 13, 839–845 (1992).
  Article CAS PubMed Google Scholar
• Speicher, M.R., Gwyn, B.S. & Ward, D.C. Karyotyping human chromosomes by combinatorial multi-fluor FISH. Nat. Genet. 12, 368–375 (1996).
  Article CAS PubMed Google Scholar
• Schrock, E. et al. Multicolor spectral karyotyping of human chromosomes. Science 273, 494–497 (1996).
  Article CAS PubMed Google Scholar
• Tanke, H.J. et al. New strategy for multi-colour fluorescence in situ hybridisation: COBRA: COmbined Binary RAtio labelling. Eur. J. Hum. Genet. 7, 2–11 (1999).
  Article CAS PubMed Google Scholar
• Szuhai, K. et al. Simultaneous molecular karyotyping and mapping of viral DNA integration sites by 25-color COBRA–FISH. Genes Chromosomes Cancer 28, 92–97 (2000).
  Article CAS PubMed Google Scholar
• Wiegant, J. et al. Differentially painting human chromosome arms with combined binary ratio-labeling fluorescence in situ hybridization. Genome Res. 10, 861–865 (2000).
  Article CAS PubMed PubMed Central Google Scholar
• Bezrookove, V. et al. Individuals with abnormal phenotype and normal G-banding karyotype: improvement and limitations in the diagnosis by the use of 24-colour FISH. Hum. Genet. 106, 392–398 (2000).
  Article CAS PubMed Google Scholar
• Szuhai, K. et al. Multicolor fluorescence in situ hybridization analysis of a synovial sarcoma of the larynx with a t(X;18)(p11.2;q11.2) and trisomies 2 and 8. Cancer Genet. Cytogenet. 153, 48–52 (2004).
  Article CAS PubMed Google Scholar
• Engels, H. et al. Comprehensive analysis of human subtelomeres with combined binary ratio labelling fluorescence in situ hybridisation. Eur. J. Hum. Genet. 11, 643–651 (2003).
  Article CAS PubMed Google Scholar
• Fodde, R. et al. Mutations in the APC tumour suppressor gene cause chromosomal instability. Nat. Cell Biol. 3, 433–438 (2001).
  Article CAS PubMed Google Scholar
• Hazelbag, H.M., Szuhai, K., Tanke, H.J., Rosenberg, C. & Hogendoorn, P.C. Primary synovial sarcoma of the heart: a cytogenetic and molecular genetic analysis combining RT–PCR and COBRA–FISH of a case with a complex karyotype. Mod. Pathol. 17, 1434–1439 (2004).
  Article PubMed Google Scholar
• Szuhai, K., Ijszenga, M., Tanke, H.J., Rosenberg, C. & Hogendoorn, P.C. Molecular cytogenetic characterization of four previously established and two newly established Ewing sarcoma cell lines. Cancer Genet. Cytogenet. 166, 173–179 (2006).
  Article CAS PubMed Google Scholar
• Telenius, H. et al. Degenerate oligonucleotide-primed PCR: general amplification of target DNA by a single degenerate primer. Genomics 13, 718–725 (1992).
  Article CAS PubMed Google Scholar
• Telenius, H. et al. Cytogenetic analysis by chromosome painting using DOP–PCR amplified flow-sorted chromosomes. Genes Chromosomes Cancer 4, 257–263 (1992).
  Article CAS PubMed Google Scholar
• Fiegler, H. et al. DNA microarrays for comparative genomic hybridization based on DOP–PCR amplification of BAC and PAC clones. Genes Chromosomes Cancer 36, 361–374 (2003).
  Article CAS PubMed Google Scholar
• Rabbitts, P. et al. Chromosome specific paints from a high resolution flow karyotype of the mouse. Nat. Genet. 9, 369–375 (1995).
  Article CAS PubMed Google Scholar
• Wiegant, J. C. et al. ULS: a versatile method of labeling nucleic acids for FISH based on a monofunctional reaction of cisplatin derivatives with guanine moieties. Cytogenet. Cell Genet. 87, 47–52 (1999).
  Article CAS PubMed Google Scholar
• van de Rijke, F.M., Heetebrij, R.J., Talman, E.G., Tanke, H.J. & Raap, A.K. Fluorescence properties, thermal duplex stability, and kinetics of formation of cyanin platinum DNAs. Anal. Biochem. 321, 71–78 (2003).
  Article CAS PubMed Google Scholar
• Wiegant, J. & Raap, A.K. in Current Protocols in Cytometry (eds. Robinson, J.P et al.) 8.3.1–8.3.21 (Wiley & Sons, New York, 1998).
  Google Scholar
• Koopman, L.A. et al. Recurrent integration of human papillomaviruses 16, 45, and 67 near translocation breakpoints in new cervical cancer cell lines. Cancer Res. 59, 5615–5624 (1999).
  CAS PubMed Google Scholar
• Brink, A.A. et al. Simultaneous mapping of human papillomavirus integration sites and molecular karyotyping in short-term cultures of cervical carcinomas by using 49-color combined binary ratio labeling fluorescence in situ hybridization. Cancer Genet. Cytogenet. 134, 145–150 (2002).
  Article CAS PubMed Google Scholar