Unmasking alternative splicing inside protein-coding exons defines exitrons and their role in proteome plasticity (original) (raw)

Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level

JOSE MANUEL RODRÍGUEZ RODRÍGUEZ

PLoS computational biology, 2015

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Listening to Silence and Understanding Nonsense: Exonic Mutations That Affect Splicing

Luca Cartegni

Nature Reviews Genetics, 2002

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Alternative Splicing May Not Be the Key to Proteome Complexity

Alfonso Valencia

Trends in Biochemical Sciences, 2017

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The exon junction complex: A splicing factor for long intron containing transcripts?

Dariel Ashton-Beaucage

Fly, 2011

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Alternative splicing and evolution: diversification, exon definition and function

Galit Lev-maor

Nature Reviews Genetics, 2010

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A general role for splicing enhancers in exon definition

Klemens Hertel

RNA, 2002

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ExonImpact: Prioritizing Pathogenic Alternative Splicing Events

Yaoqi Zhou

Human mutation, 2016

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In or Out? New Insights on Exon Recognition through Splice-Site Interdependency

mubeen khan

International Journal of Molecular Sciences

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The impact of genetically controlled splicing on exon inclusion and protein structure

Jonah Einson

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Alu Exonization Events Reveal Features Required for Precise Recognition of Exons by the Splicing Machinery

Nurit Gal-mark

PLoS Computational Biology, 2009

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Introns play an essential role in splicing-dependent formation of the exon junction complex

保典 佐々木

Genes & Development, 2007

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Defective splicing, disease and therapy: searching for master checkpoints in exon definition

Emanuele Buratti

Nucleic Acids Research, 2006

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Extein residues play an intimate role in the rate-limiting step of protein trans-splicing

David Cowburn

2013

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Widespread occurrence of alternative splicing at NAGNAG acceptors contributes to proteome plasticity

Matthias Platzer

Nature Genetics, 2004

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Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12

Ariful Haque

Nucleic Acids Research, 2010

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Divergence of exonic splicing elements after gene duplication and the impact on gene structures

Zhenguo Zhang

Genome Biology, 2009

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The Emergence of Alternative 3′ and 5′ Splice Site Exons from Constitutive Exons

Galit Lev-maor

PLoS Computational Biology, 2007

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RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons

will fairbrother

Nucleic Acids Research

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BRCA1 exon 11 a model of long exon splicing regulation

Emanuele Buratti

RNA Biology, 2014

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Overestimation of alternative splicing caused by variable probe characteristics in exon arrays

Edward Oakeley

Nucleic Acids Research, 2009

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Genomic variants in exons and introns: identifying the splicing spoilers

Franco Pagani

Nature Reviews Genetics, 2004

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Inhibition of a spliceosome turnover pathway suppresses splicing defects

Brian Rymond

Proceedings of the National Academy of Sciences, 2006

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Deep indel mutagenesis reveals the regulatory and modulatory architecture of alternative exon splicing

Gioia Quarantani

bioRxiv (Cold Spring Harbor Laboratory), 2024

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Efficient internal exon recognition depends on near equal contributions from the 3' and 5' splice sites

Klemens Hertel

Nucleic Acids Research, 2011

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Serine/arginine-rich protein-dependent suppression of exon skipping by exonic splicing enhancers

Klemens Hertel

Proceedings of the National Academy of Sciences, 2005

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From the Cover: Serine/arginine-rich protein-dependent suppression of exon skipping by exonic splicing enhancers

Thomas Schaal

Proceedings of The National Academy of Sciences, 2005

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The Exon Junction Complex Controls the Efficient and Faithful Splicing of a Subset of Transcripts Involved in Mitotic Cell-Cycle Progression

Kenta Nakai

International journal of molecular sciences, 2016

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Changes in exon-intron structure during vertebrate evolution affect the splicing pattern of exons

Osnat Penn

Genome Research, 2012

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Splicing of designer exons informs a biophysical model for exon definition

Mauricio Arias

RNA, 2014

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