The use of BrCN for assembling modified DNA duplexes and DNA-RNA hybrids; comparison with water-soluble carbodiimide (original) (raw)

Chemical reactions within DNA duplexes Cyanogen bromide as an effective oligodeoxyribonucleotide coupling agent

FEBS Letters, 1988

Thermodynamic and kinetic characterization of duplex formation between 2'-O, 4'-C-methylene-modified oligoribonucleotides, DNA and RNA

Leonardo Dagdug

Bioscience reports, 2007

View PDFchevron_right

Modification at the C2′-O-Position with 2-Methylbenzothiophene Induces Unique Structural Changes and Thermal Transitions on Duplexes of RNA and DNA

Cheyenne Phillips

ACS Omega

View PDFchevron_right

[Cleavage of RNA in hybrid duplexes by E. coli ribonuclease H. II. Substrate properties of nucleotides containing non-nucleotide linkers]

C. Scalfi-Happ, P. Vorobjev

Bioorganicheskaia khimiia, 2000

View PDFchevron_right

Synthesis and RNA-selective hybridization of α-l-ribo- and β-d-lyxo-configured oligonucleotides

Torsten Bryld

Tetrahedron, 2006

View PDFchevron_right

Double Sugar and Phosphate Backbone-Constrained Nucleotides: Synthesis, Structure, Stability, and Their Incorporation into Oligodeoxynucleotides

chuanzheng zhou

Journal of Organic Chemistry, 2009

View PDFchevron_right

Remarkable enhancement of binding affinity of Heterocycle-modified DNA to DNA and RNA. Synthesis, characterization and biophysical evaluation of N2-imidazolylpropylguanine and N2-imidazolylpropyl-2-aminoadenine modified oligonucleotides

Dan Cook

Tetrahedron Letters, 1994

View PDFchevron_right

Peptide Nucleic Acid-DNA Duplexes Containing the Universal Base 3-Nitropyrrole

Natasha Paul

Methods, 2001

View PDFchevron_right

NMR studies of DNA duplexes singly cross-linked by different synthetic linkers

Willy Serge

Nucleic Acids Research, 1995

View PDFchevron_right

Hairpin-shaped DNA duplexes with disulfide bonds in sugar-phosphate backbone as potential DNA reagents for crosslinking with proteins

David Tabatadze

FEBS Letters, 1999

View PDFchevron_right

Oligonucleotide circularization by template-directed chemical ligation

Marta Blumenfeld

Nucleic Acids Research, 1993

View PDFchevron_right

High-resolution NMR study of a synthetic DNA-RNA hybrid dodecamer containing the consensus Pribnow promoter sequence: d(CGTTATAATGCG).cntdot.r(CGCAUUAUAACG)

Peter Flynn

Biochemistry, 1989

View PDFchevron_right

Structural and kinetic aspects of chemical reactions in DNA duplexes. Information on DNA local structure obtained from chemical ligation data

Vladimir Sergeev

Nucleic Acids Research, 1991

View PDFchevron_right

Chemical synthesis of biologically active oligoribonucleotides using β-cyanoethyl protected ribonucleoside phosphoramidites

Christopher Francklyn, Nassim Usman

Nucleic Acids Research, 1990

View PDFchevron_right

Oligonucleotide–Minor Groove Binder Conjugates and Their Complexes with Complementary DNA: Effect of Conjugate Structural Factors on the Thermal Stability of Duplexes

Alexander Sinyakov

Nucleosides, Nucleotides and Nucleic Acids, 2004

View PDFchevron_right

Efficient Synthesis of DNA Dumbbells Using Template-Induced Chemical Ligation in Double-Stranded Polynucleotides Closed by Minihairpin Fragments

Marta Blumenfeld

Antisense and Nucleic Acid Drug Development, 1999

View PDFchevron_right

Synthesis of a carboxamide linked T * T dimer and its incorporation in oligonucleotides

Bjørn Holst

Nucleic Acids Research, 1993

View PDFchevron_right

Oligonucleotide—Minor Groove Binder 1:2 Conjugates: Side by Side Parallel Minor Groove Binder Motif in Stabilization of DNA Duplex

Alexander Sinyakov

Nucleosides, Nucleotides and Nucleic Acids, 2004

View PDFchevron_right

Unnatural triazolyl nucleoside stabilizes an abasic site containing DNA duplex equally as the stabilization of a natural A–T pair

Subhendu Bag

RSC Advances, 2013

View PDFchevron_right

Solution Structures of DNA Duplexes Containing a DNA·RNA Hybrid Region, d(GG)r(AGAU)d(GAC)·d(GTCATCTCC) and d(GGAGA)r(UGAC)·d(GTCATCTCC) † , ‡

Chojiro Kojima

Biochemistry, 1996

View PDFchevron_right

Mixed-sequence pyrrolidine-amide oligonucleotide mimics: Boc(Z) synthesis and DNA/RNA binding properties

Roberta Melander

Organic & Biomolecular Chemistry, 2007

View PDFchevron_right

Phosphoramidate Ligation of Oligonucleotides in Nanoscale Structures

hassan said

ChemBioChem, 2016

View PDFchevron_right

The 5-Me of thyminyl (T) interaction with the neighboring nucleobases dictate the relative stability of isosequential DNA–RNA hybrid duplexes

Jyoti Chattopadhyaya

Organic & Biomolecular Chemistry, 2005

View PDFchevron_right

Studies of a Chemically Modified Oligodeoxynucleotide Containing a 5-ATOM Amide Backbone Which Exhibits Improved Binding to Rna

George Minasov

Nucleosides, Nucleotides and Nucleic Acids, 2001

View PDFchevron_right

Structure of a DNA Duplex That Contains α-Anomeric Nucleotides and 3‘−3‘ and 5‘−5‘ Phosphodiester Linkages: Coexistence of Parallel and Antiparallel DNA

Markus Germann

Biochemistry, 1996

View PDFchevron_right

Preparation of Photoreactive Oligonucleotide Duplexes and Their Application to Photoaffinity Modification of DNA-Binding Proteins

Dmitry Kolpashchikov

2001

View PDFchevron_right

Stabilization of DNA:DNA and DNA:RNA duplexes by substitution of 2′-deoxyadenosine with 2′-deoxy-2-aminoadenosine

Sergei Gryaznov

Tetrahedron Letters, 1994

View PDFchevron_right

Oligonucleotides with “Clickable” Sugar Residues: Synthesis, Duplex Stability, and Terminal versus Central Interstrand Cross-Linking of 2′-O-Propargylated 2-Aminoadenosine with a Bifunctional Azide

peter leonard

The Journal of Organic Chemistry, 2014

View PDFchevron_right

Parallel-stranded DNA: Enhancing duplex stability by the ‘G-clamp’ and a pyrrolo-dC derivative

peter leonard

Organic & Biomolecular Chemistry, 2012

View PDFchevron_right

Synthesis and Properties of Oligodeoxynucleotides Possessing N-Phosphoryl Groups

Koh-ichiroh Shohda

European Journal of Organic Chemistry, 2003

View PDFchevron_right

Synthesis and characterization of new 3′-3′ linked oligodeoxyribonucleotides for alternate strand triple helix formation

Daniela Montesarchio

Tetrahedron, 1999

View PDFchevron_right

The First Example of a Hoogsteen Basepaired DNA Duplex in Dynamic Equilibrium with a Watson-Crick Basepaired Duplex��A Structural (NMR), Kinetic and Thermodynamic Study

Peter Agback

2001

View PDFchevron_right

Structure and Dynamics of a DNA.cntdot.RNA Hybrid Duplex with a Chiral Phosphorothioate Moiety: NMR and Molecular Dynamics with Conventional and Time-Averaged Restraints

Mark A Reynolds

Biochemistry, 1995

View PDFchevron_right

Solution Structure of an O 6 -[4-oxo-4-(3-Pyridyl)butyl]guanine Adduct in an 11mer DNA Duplex: Evidence for Formation of a Base Triplex †

Monique Balhorn

Biochemistry, 2003

View PDFchevron_right

Stabilization of G•C-Containing DNA Duplexes by Polyamides with Parallel Orientation in the Minor Groove

Alexandre Boutorine, Alexander Sinyakov

2004

View PDFchevron_right

The use of BrCN for assembling modified DNA duplexes and DNA-RNA hybrids; comparison with water-soluble carbodiimide (original) (raw)

Related papers