RNA Dynamics by Design: Biasing Ensembles Towards the Ligand‐Bound State
andrew stelzer
Angewandte …, 2010
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Correlating Structural Dynamics and Function in Single Ribozyme Molecules
Steven Chu
Science, 2002
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Molecular dynamics in the hairpin ribozyme: Calculational and experimental aspects
OMONDI OCHIENG
2015
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Molecular dynamics investigations of hammerhead ribozyme RNA
E. Westhof
European Biophysics Journal, 1998
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Roles of Long-Range Tertiary Interactions in Limiting Dynamics of the Tetrahymena Group I Ribozyme
Steve Bonilla
Journal of the American Chemical Society, 2014
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RNA Kink-Turns as Molecular Elbows: Hydration, Cation Binding, and Large-Scale Dynamics
Filip Razga
Structure, 2006
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Structural Dynamics of Precursor and Product of the RNA Enzyme from the Hepatitis Delta Virus as Revealed by Molecular Dynamics Simulations
Nils Walter
Journal of Molecular Biology, 2005
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Structural basis for heterogeneous kinetics: Reengineering the hairpin ribozyme
Nils Walter
Proceedings of the National Academy of Sciences, 1998
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Molecular Dynamics of Rna Structural Motif. Temperature Enhanced Sampling of the Conformational Space
Tadeusz Kulinski
Computational Methods in Science and Technology, 2002
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Base and Sugar Requirements for RNA Cleavage of Essential Nucleoside Residues in Internal Loop B of the Hairpin Ribozyme: Implications for Secondary Structure
Leonid Beigelman
Nucleic Acids Research, 1996
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The effect of structure in a long target RNA on ribozyme cleavage efficiency
Thomas Campbell
Nucleic Acids Research, 1997
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Unraveling the structural complexity in a single-stranded RNA tail: implications for efficient ligand binding in the prequeuosine riboswitch
H. Al Hashimi
Nucleic Acids Research, 2012
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Extensive Molecular Dynamics Simulations Showing That Canonical G8 and Protonated A38H+ Forms Are Most Consistent with Crystal Structures of Hairpin Ribozyme
Nils Walter
Journal of Physical Chemistry B, 2010
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Simulation of the structure and dynamics of nonhelical RNA motifs
Martin Zacharias
Current Opinion in Structural Biology, 2000
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Rearrangement of a Stable RNA Secondary Structure during VS Ribozyme Catalysis
Richard Collins III
Molecular Cell, 2000
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Extensive Molecular Dynamics Simulations Showing That Canonical G8 and Protonated A38H + Forms Are Most Consistent with Crystal Structures of Hairpin Ribozyme
Nils Walter
The Journal of Physical Chemistry B, 2010
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RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview
Nils Walter
Chemical Reviews, 2018
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Ribosome-dependent conformational flexibility changes and RNA dynamics of IRES domains revealed by differential SHAPE
Gloria Lozano
Scientific Reports
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Conformationally restricted nucleotides as a probe of structure-function relationships in RNA
Ite Laird-offringa
RNA, 2008
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Global Structure and Flexibility of Hairpin Ribozymes with Extended Terminal Helices
Dietmar Porschke, Nils Walter
Journal of Molecular Biology, 1999
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Molecular dynamics simulation studies of a protein–RNA complex with a selectively modified binding interface
Anne Baranger
Biopolymers, 2006
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Entropy-Driven Folding of an RNA Helical Junction: An Isothermal Titration Calorimetric Analysis of the Hammerhead Ribozyme †
Peter Mikulecky
Biochemistry, 2004
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Native-like RNA Tertiary Structures Using a Sequence-Encoded Cleavage Agent and Refinement by Discrete Molecular Dynamics
Nikolay Dokholyan
Journal of the American Chemical Society, 2009
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Cation-Specific Structural Accommodation within a Catalytic RNA
John Burke
Biochemistry, 2006
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Sequence elements outside the catalytic core of natural hairpin ribozymes modulate the reactions differentially
Gerhard Steger
Biological Chemistry, 2011
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Elbow Flexibility of the kt38 RNA Kink-Turn Motif Investigated by Free-Energy Molecular Dynamics Simulations
Martin Zacharias
Biophysical Journal, 2009
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Inter-domain cross-linking and molecular modelling of the hairpin ribozyme
E. Westhof
Journal of Molecular Biology, 1997
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Inter-domain cross-linking and molecular modelling of the hairpin ribozyme 1 1 Edited by A. R. Fresh
Eric Westhof
Journal of Molecular Biology, 1997
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Triplex structures in an RNA pseudoknot enhance mechanical stability and increase efficiency of -1 ribosomal frameshifting
Ming-Yuan Chou
Proceedings of the National Academy of Sciences of the United States of America, 2009
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Conformational coupling, bridge helix dynamics and active site dehydration in catalysis by RNA polymerase
Steve Seibold
Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 2010
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